miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 3' -55.1 NC_006151.1 + 81195 0.66 0.933048
Target:  5'- aGCGUguacgccgggccGCAGUccggGCGCCGGCgCGUgaacaCGAa -3'
miRNA:   3'- -CGCA------------UGUCGa---CGCGGUCGaGCAa----GCU- -5'
29532 3' -55.1 NC_006151.1 + 137006 0.66 0.927836
Target:  5'- cGCGcACGGCgcuggGCGCCcuGCUCGgccugcCGGa -3'
miRNA:   3'- -CGCaUGUCGa----CGCGGu-CGAGCaa----GCU- -5'
29532 3' -55.1 NC_006151.1 + 122784 0.66 0.927836
Target:  5'- cGUGgGCGGCUGCGCgGcCUCGccCGAc -3'
miRNA:   3'- -CGCaUGUCGACGCGgUcGAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 97806 0.66 0.927836
Target:  5'- gGCGcGCGGCcgUGCGCCGGUcgCGguagUUGGu -3'
miRNA:   3'- -CGCaUGUCG--ACGCGGUCGa-GCa---AGCU- -5'
29532 3' -55.1 NC_006151.1 + 90237 0.66 0.927836
Target:  5'- cGCGUcGCGGCUG-GCCAGCgcccagccCGcggCGAa -3'
miRNA:   3'- -CGCA-UGUCGACgCGGUCGa-------GCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 50177 0.66 0.927836
Target:  5'- cGCGgcCGGCcGCGCCGGU--GUUCa- -3'
miRNA:   3'- -CGCauGUCGaCGCGGUCGagCAAGcu -5'
29532 3' -55.1 NC_006151.1 + 54939 0.66 0.927836
Target:  5'- gGCGUGCcacgcGCUGCGCgAGCaCGcgCGc -3'
miRNA:   3'- -CGCAUGu----CGACGCGgUCGaGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 131848 0.66 0.922381
Target:  5'- aGCGggGCGGCcgagacgcGCGCCGGCggCG-UCGGg -3'
miRNA:   3'- -CGCa-UGUCGa-------CGCGGUCGa-GCaAGCU- -5'
29532 3' -55.1 NC_006151.1 + 122495 0.66 0.922381
Target:  5'- gGCGagACGGC-GCGCCGGCgcgCGgaCGc -3'
miRNA:   3'- -CGCa-UGUCGaCGCGGUCGa--GCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 17412 0.66 0.922381
Target:  5'- cGCGcgGCAGCaGgGCCAGCgagcCGggggCGAu -3'
miRNA:   3'- -CGCa-UGUCGaCgCGGUCGa---GCaa--GCU- -5'
29532 3' -55.1 NC_006151.1 + 83094 0.66 0.920697
Target:  5'- cGCGUGCaccucgAGCggGCGCCcgcgccggucgcagAGCUCGggCGc -3'
miRNA:   3'- -CGCAUG------UCGa-CGCGG--------------UCGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 104036 0.66 0.916682
Target:  5'- aGCGcGC-GCaGCGCCAGCUCuGggCGc -3'
miRNA:   3'- -CGCaUGuCGaCGCGGUCGAG-CaaGCu -5'
29532 3' -55.1 NC_006151.1 + 59745 0.66 0.916682
Target:  5'- cGCGcGCAGCaGCuCCugcAGCUCGUccUCGGg -3'
miRNA:   3'- -CGCaUGUCGaCGcGG---UCGAGCA--AGCU- -5'
29532 3' -55.1 NC_006151.1 + 66552 0.66 0.916098
Target:  5'- cGCGcGCGGCcGCGCCGccguggacccggcGCUCGcgCGc -3'
miRNA:   3'- -CGCaUGUCGaCGCGGU-------------CGAGCaaGCu -5'
29532 3' -55.1 NC_006151.1 + 21599 0.66 0.911344
Target:  5'- gGCGUACGGCgugGCGgCGGCguaggcccgcgggagCGUcCGGc -3'
miRNA:   3'- -CGCAUGUCGa--CGCgGUCGa--------------GCAaGCU- -5'
29532 3' -55.1 NC_006151.1 + 97373 0.66 0.910739
Target:  5'- gGCGggcGCGGCggggGCGUCGGcCUCGUcCGu -3'
miRNA:   3'- -CGCa--UGUCGa---CGCGGUC-GAGCAaGCu -5'
29532 3' -55.1 NC_006151.1 + 71327 0.66 0.910739
Target:  5'- aGCGcgGCGGCUGCGCCGacgacCUCGccgUGGc -3'
miRNA:   3'- -CGCa-UGUCGACGCGGUc----GAGCaa-GCU- -5'
29532 3' -55.1 NC_006151.1 + 35090 0.67 0.891474
Target:  5'- cGCGUGCcgAGCaUGCGCCucgcGCcCGcgCGAg -3'
miRNA:   3'- -CGCAUG--UCG-ACGCGGu---CGaGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 128220 0.67 0.891474
Target:  5'- gGCGUGCgacgAGCUcguggGCGCCAGgUCGc-CGAu -3'
miRNA:   3'- -CGCAUG----UCGA-----CGCGGUCgAGCaaGCU- -5'
29532 3' -55.1 NC_006151.1 + 85804 0.67 0.891474
Target:  5'- cGCGUGCAGC-GCcaCCAGCUCaacCGGu -3'
miRNA:   3'- -CGCAUGUCGaCGc-GGUCGAGcaaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.