miRNA display CGI


Results 1 - 20 of 353 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29532 5' -61.1 NC_006151.1 + 137663 0.65 0.717179
Target:  5'- cGGCGGAcgagcgcccgccguGcGGCUGCCGCGccaagauGGGCUUCCGc -3'
miRNA:   3'- -CCGCCU--------------U-CCGGUGGUGC-------UUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 6158 0.66 0.715262
Target:  5'- cGGCGGccucGGCCuCgGCGGcgucgucggagaagaGGCCgCCCGg -3'
miRNA:   3'- -CCGCCuu--CCGGuGgUGCU---------------UCGG-GGGC- -5'
29532 5' -61.1 NC_006151.1 + 94675 0.66 0.711421
Target:  5'- cGGCGGGcagcuccccgaAGGCCgcgGCCACGGAccacugcgcgcGCUCCa- -3'
miRNA:   3'- -CCGCCU-----------UCCGG---UGGUGCUU-----------CGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 1789 0.66 0.711421
Target:  5'- aGGaGGAGGGCCACCGgGccggggaggcAGGCgCCgGg -3'
miRNA:   3'- -CCgCCUUCCGGUGGUgC----------UUCGgGGgC- -5'
29532 5' -61.1 NC_006151.1 + 111548 0.66 0.711421
Target:  5'- uGGCGcgcaGCgGCCGCGuguccacGCCCCCGg -3'
miRNA:   3'- -CCGCcuucCGgUGGUGCuu-----CGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 5923 0.66 0.711421
Target:  5'- cGGCGGccGGGGCC----CGGAGCCggCCCGg -3'
miRNA:   3'- -CCGCC--UUCCGGugguGCUUCGG--GGGC- -5'
29532 5' -61.1 NC_006151.1 + 10473 0.66 0.711421
Target:  5'- cGGCGGugaaggagGAGaGCCGCCcgGCGcgcGCCCgCCGc -3'
miRNA:   3'- -CCGCC--------UUC-CGGUGG--UGCuu-CGGG-GGC- -5'
29532 5' -61.1 NC_006151.1 + 13112 0.66 0.711421
Target:  5'- cGCGGcGGGUCAcgcgcgcucCCGCGAcuucccGGCCCgCGa -3'
miRNA:   3'- cCGCCuUCCGGU---------GGUGCU------UCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 30873 0.66 0.711421
Target:  5'- cGGCGGAggaggggggaagAGGCgGCgaGCGGAGCgCgCGg -3'
miRNA:   3'- -CCGCCU------------UCCGgUGg-UGCUUCGgGgGC- -5'
29532 5' -61.1 NC_006151.1 + 98626 0.66 0.711421
Target:  5'- aGUGGugcGCCGCCuucgACGAGGCCCUgGc -3'
miRNA:   3'- cCGCCuucCGGUGG----UGCUUCGGGGgC- -5'
29532 5' -61.1 NC_006151.1 + 132226 0.66 0.711421
Target:  5'- gGGUGGAAGaggcacgucaGCUGCCGCGccuGGUCCCa- -3'
miRNA:   3'- -CCGCCUUC----------CGGUGGUGCu--UCGGGGgc -5'
29532 5' -61.1 NC_006151.1 + 139281 0.66 0.711421
Target:  5'- cGGCGGAcGcGCCGCCcuCGgcGUCUgCGg -3'
miRNA:   3'- -CCGCCUuC-CGGUGGu-GCuuCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 65211 0.66 0.701775
Target:  5'- cGCGaguuGAGGGCCAUgAgGcuaAAGUCCCCGa -3'
miRNA:   3'- cCGC----CUUCCGGUGgUgC---UUCGGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 55491 0.66 0.701775
Target:  5'- cGCGGAcGGCCagccGCCGCG-GGaCCUCGg -3'
miRNA:   3'- cCGCCUuCCGG----UGGUGCuUCgGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 86088 0.66 0.701775
Target:  5'- cGCGccgccGCCGCCAUGggGCCCgUGu -3'
miRNA:   3'- cCGCcuuc-CGGUGGUGCuuCGGGgGC- -5'
29532 5' -61.1 NC_006151.1 + 59463 0.66 0.701775
Target:  5'- cGCGGccGAGuCCACCuccgGCGAGGCgCCCu -3'
miRNA:   3'- cCGCC--UUCcGGUGG----UGCUUCGgGGGc -5'
29532 5' -61.1 NC_006151.1 + 42999 0.66 0.701775
Target:  5'- cGGgGGAGGGCgGCgGgCGcuuGGCaCCCCu -3'
miRNA:   3'- -CCgCCUUCCGgUGgU-GCu--UCG-GGGGc -5'
29532 5' -61.1 NC_006151.1 + 35403 0.66 0.701775
Target:  5'- gGGCaaGAuGGCCGCCGCGggGgCCg-- -3'
miRNA:   3'- -CCGc-CUuCCGGUGGUGCuuCgGGggc -5'
29532 5' -61.1 NC_006151.1 + 33962 0.66 0.701775
Target:  5'- gGGCGGGacgcGGcGCC-CgCGCGggGacacucuuuCCCCCGg -3'
miRNA:   3'- -CCGCCU----UC-CGGuG-GUGCuuC---------GGGGGC- -5'
29532 5' -61.1 NC_006151.1 + 9640 0.66 0.701775
Target:  5'- aGCGGGAGGgagaGgCGCGgcGCCCCgCGc -3'
miRNA:   3'- cCGCCUUCCgg--UgGUGCuuCGGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.