miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 5' -61.8 NC_006151.1 + 137339 0.66 0.697482
Target:  5'- cGCuGCuCUUCCCCGagGCCGAcggcgacuGGGCCg -3'
miRNA:   3'- -CGcCG-GAAGGGGCggCGGCU--------CUUGGg -5'
29539 5' -61.8 NC_006151.1 + 28586 0.66 0.697482
Target:  5'- uUGGCCggcgcgUCCCCggaggcggguGCCGCgGGGuucgauCCCu -3'
miRNA:   3'- cGCCGGa-----AGGGG----------CGGCGgCUCuu----GGG- -5'
29539 5' -61.8 NC_006151.1 + 28867 0.66 0.697482
Target:  5'- uUGGCCggcgcgUCCCCggaggcggguGCCGCgGGGuucgauCCCu -3'
miRNA:   3'- cGCCGGa-----AGGGG----------CGGCGgCUCuu----GGG- -5'
29539 5' -61.8 NC_006151.1 + 50445 0.66 0.697482
Target:  5'- gGCGGCCUgggCaCCGCC-CgCGGGcGCUCg -3'
miRNA:   3'- -CGCCGGAa--GgGGCGGcG-GCUCuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 56558 0.66 0.697482
Target:  5'- uCGGCCUgCCgggcgacgcgCCGCCGCcCGAcGGGCUg -3'
miRNA:   3'- cGCCGGAaGG----------GGCGGCG-GCU-CUUGGg -5'
29539 5' -61.8 NC_006151.1 + 87088 0.66 0.697482
Target:  5'- cGCGaGCga-CCUCGCCGCCGuGGuCUCg -3'
miRNA:   3'- -CGC-CGgaaGGGGCGGCGGCuCUuGGG- -5'
29539 5' -61.8 NC_006151.1 + 139455 0.66 0.697482
Target:  5'- -aGGCg--CCCCGCCGCCcgccACCUg -3'
miRNA:   3'- cgCCGgaaGGGGCGGCGGcucuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 31028 0.66 0.697482
Target:  5'- cGCGGC---CCUCGCgGCCcggGAGAAgCCu -3'
miRNA:   3'- -CGCCGgaaGGGGCGgCGG---CUCUUgGG- -5'
29539 5' -61.8 NC_006151.1 + 32246 0.66 0.697482
Target:  5'- cGCGGCga-CCgCCGCCGCCGcu--CUCg -3'
miRNA:   3'- -CGCCGgaaGG-GGCGGCGGCucuuGGG- -5'
29539 5' -61.8 NC_006151.1 + 57450 0.66 0.697482
Target:  5'- gGCGGCC--CCCgCGUCGgCC-AGGugCCg -3'
miRNA:   3'- -CGCCGGaaGGG-GCGGC-GGcUCUugGG- -5'
29539 5' -61.8 NC_006151.1 + 82328 0.66 0.697482
Target:  5'- aCGGCCaccUCCgcgggccacaCCGCCGCCGuGGugUa -3'
miRNA:   3'- cGCCGGa--AGG----------GGCGGCGGCuCUugGg -5'
29539 5' -61.8 NC_006151.1 + 127789 0.66 0.697482
Target:  5'- ---cCCUcCCCCGCCGCCGcgcgcgGGGGCgCg -3'
miRNA:   3'- cgccGGAaGGGGCGGCGGC------UCUUGgG- -5'
29539 5' -61.8 NC_006151.1 + 130016 0.66 0.697482
Target:  5'- aCGGCgCgcgCCaCgGCCGUCGuGAGCCa -3'
miRNA:   3'- cGCCG-Gaa-GG-GgCGGCGGCuCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 48916 0.66 0.696521
Target:  5'- cGCGGCCg---CUGCCuGaCCGAGGaggugcuGCCCg -3'
miRNA:   3'- -CGCCGGaaggGGCGG-C-GGCUCU-------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 136755 0.66 0.69171
Target:  5'- cGCGcGCCUcgCCCCgGCCaugggcgccggcuacGUgGAGGACCg -3'
miRNA:   3'- -CGC-CGGAa-GGGG-CGG---------------CGgCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 86581 0.66 0.69171
Target:  5'- cGCGGgCgcgCUCCgagcugcuggcgcgcGCCGCCGAGucGCCg -3'
miRNA:   3'- -CGCCgGaa-GGGG---------------CGGCGGCUCu-UGGg -5'
29539 5' -61.8 NC_006151.1 + 134725 0.66 0.687852
Target:  5'- cGUGGCCUUCgCgcgggacuuuguCGCC-CCGAGcagcgcgcgcggGGCCCg -3'
miRNA:   3'- -CGCCGGAAGgG------------GCGGcGGCUC------------UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 130420 0.66 0.687852
Target:  5'- cGCGGgCg-CgCCGaCCGUCGAGGACUg -3'
miRNA:   3'- -CGCCgGaaGgGGC-GGCGGCUCUUGGg -5'
29539 5' -61.8 NC_006151.1 + 122347 0.66 0.687852
Target:  5'- cGUGGCCaagaaCCUGCCGCaCGugcacGGGCUCg -3'
miRNA:   3'- -CGCCGGaag--GGGCGGCG-GCu----CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 112609 0.66 0.687852
Target:  5'- cGCGGCg--CCgCUGgCGCUGGacGAGCCCu -3'
miRNA:   3'- -CGCCGgaaGG-GGCgGCGGCU--CUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.