miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 137731 0.66 0.806206
Target:  5'- cGCCGUa-CGCGGUggccggCGCCGACAcggucCGCg -3'
miRNA:   3'- -CGGCAccGCGCCGa-----GCGGUUGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 104900 0.66 0.806206
Target:  5'- gGUgGUGGaCGCGGCggcggCGCgCGACcgCGa -3'
miRNA:   3'- -CGgCACC-GCGCCGa----GCG-GUUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 19728 0.66 0.806206
Target:  5'- aGCCGaagcccGCGCGGCggucgUCGCCGuugAgGUCGCc -3'
miRNA:   3'- -CGGCac----CGCGCCG-----AGCGGU---UgUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 39005 0.66 0.806206
Target:  5'- cGCCGcGGCGCcccGCUCcGCC-GCcgCGCc -3'
miRNA:   3'- -CGGCaCCGCGc--CGAG-CGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 49945 0.66 0.806206
Target:  5'- cGCCGggaccUGGcCGCGGCccUgGCCGGCcuccccGUCGCc -3'
miRNA:   3'- -CGGC-----ACC-GCGCCG--AgCGGUUG------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 81427 0.66 0.806206
Target:  5'- cGCCGaGGuCGCGGCgcagCGagaCGGCG-CACg -3'
miRNA:   3'- -CGGCaCC-GCGCCGa---GCg--GUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 111363 0.66 0.806206
Target:  5'- cGCgCGgGGCGagGGCcccUCGCCGuCGUCGCc -3'
miRNA:   3'- -CG-GCaCCGCg-CCG---AGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 113437 0.66 0.806206
Target:  5'- cGCCGcuuccGGCGCGGCgUGCuCAGCuacUCGg -3'
miRNA:   3'- -CGGCa----CCGCGCCGaGCG-GUUGu--AGUg -5'
29540 5' -58.5 NC_006151.1 + 129694 0.66 0.806206
Target:  5'- cGCCGUGGacCGCGGCgccgaGCaggcaguugagCAGCAgguUCGCg -3'
miRNA:   3'- -CGGCACC--GCGCCGag---CG-----------GUUGU---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 5551 0.66 0.806206
Target:  5'- cGCgGcGGCG-GGCUCGUCgAGCAggggcUCGCg -3'
miRNA:   3'- -CGgCaCCGCgCCGAGCGG-UUGU-----AGUG- -5'
29540 5' -58.5 NC_006151.1 + 103995 0.66 0.800926
Target:  5'- gGCCGUGGCGgccguggaGGCgCGCCGcgcggcggagguggaGCG-CGCg -3'
miRNA:   3'- -CGGCACCGCg-------CCGaGCGGU---------------UGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 127569 0.66 0.797377
Target:  5'- cGCCGccGGCGCcucGUUCGCCGucccCGUCGg -3'
miRNA:   3'- -CGGCa-CCGCGc--CGAGCGGUu---GUAGUg -5'
29540 5' -58.5 NC_006151.1 + 66663 0.66 0.797377
Target:  5'- cGCCaUGGCgGCGGUggaCGCCAugcggACGUC-Cg -3'
miRNA:   3'- -CGGcACCG-CGCCGa--GCGGU-----UGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 68154 0.66 0.797377
Target:  5'- gGUCGUGGUcaCGGC-CGCCAcCAgCGCg -3'
miRNA:   3'- -CGGCACCGc-GCCGaGCGGUuGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 4279 0.66 0.788402
Target:  5'- cGCCGcGGCaggccaggacGCaGGCgucCGCCAGC-UCGCg -3'
miRNA:   3'- -CGGCaCCG----------CG-CCGa--GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 62433 0.66 0.788402
Target:  5'- cGUCGUGcGCcUGGUccgCGCCuGCAUCGCc -3'
miRNA:   3'- -CGGCAC-CGcGCCGa--GCGGuUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 64478 0.66 0.788402
Target:  5'- cGCCGcGGCG-GGgaCGCCcGCGggCGCg -3'
miRNA:   3'- -CGGCaCCGCgCCgaGCGGuUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 69971 0.66 0.788402
Target:  5'- gGCCGcgcgGGCGCuGCagcggCGgCAGCGUCAg -3'
miRNA:   3'- -CGGCa---CCGCGcCGa----GCgGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 102409 0.66 0.788402
Target:  5'- cGCgCGUcGCGCGGCcCGCgAACGagGCc -3'
miRNA:   3'- -CG-GCAcCGCGCCGaGCGgUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 664 0.66 0.788402
Target:  5'- gGCCGgGGCG-GGCUCcGCgGAUcgCAUc -3'
miRNA:   3'- -CGGCaCCGCgCCGAG-CGgUUGuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.