miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 77886 0.65 0.903665
Target:  5'- --gGCGUgcgccccccgcucaGCGGCGAgACGCGgCCcacgGCCg -3'
miRNA:   3'- cugCGCA--------------UGUCGUUgUGCGC-GGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 84473 0.65 0.903033
Target:  5'- cGCGCGUgguucgccuucgagGCcgcugcgaucccgGGCAGCGCGCGCCacuucaucgcGCCc -3'
miRNA:   3'- cUGCGCA--------------UG-------------UCGUUGUGCGCGGa---------CGG- -5'
29543 3' -56.1 NC_006151.1 + 10644 0.66 0.901124
Target:  5'- cGGCGCGgcauccccgcccagGCGGCGggggagcGCggaGCGCGCC-GCCc -3'
miRNA:   3'- -CUGCGCa-------------UGUCGU-------UG---UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 130731 0.66 0.899839
Target:  5'- cGCGCG-GCcGCGGCGCaGCGCCacccacgacggcaugGCCa -3'
miRNA:   3'- cUGCGCaUGuCGUUGUG-CGCGGa--------------CGG- -5'
29543 3' -56.1 NC_006151.1 + 129981 0.66 0.899839
Target:  5'- cGGCGCGgaaggccucgucguCGGggauguccgagaCGGCGCGCGCCacgGCCg -3'
miRNA:   3'- -CUGCGCau------------GUC------------GUUGUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 89703 0.66 0.899193
Target:  5'- -nCGCGUcCAGgAACccgGCgGCGCCgGCCg -3'
miRNA:   3'- cuGCGCAuGUCgUUG---UG-CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 75216 0.66 0.899193
Target:  5'- --gGCGU-CGG-GGCGCGCGUCgGCCa -3'
miRNA:   3'- cugCGCAuGUCgUUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 65362 0.66 0.899193
Target:  5'- aGACGCGccccaggGCGuGCAcCACGUGCCccgggcgcGCCg -3'
miRNA:   3'- -CUGCGCa------UGU-CGUuGUGCGCGGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 50667 0.66 0.899193
Target:  5'- -uCGUGcGCGGCcGCAccccCGCGCC-GCCg -3'
miRNA:   3'- cuGCGCaUGUCGuUGU----GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 82000 0.66 0.899193
Target:  5'- --gGCGgccaggGCGGCcGCGUGCGCC-GCCg -3'
miRNA:   3'- cugCGCa-----UGUCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 60033 0.66 0.899193
Target:  5'- --aGCGUGCAGCGcucgaACAgGUGCUUGa- -3'
miRNA:   3'- cugCGCAUGUCGU-----UGUgCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 98693 0.66 0.899193
Target:  5'- -cCGCGUcgugcccccggaGCAGaCGGCGCGCGCgCUcgugcaGCCc -3'
miRNA:   3'- cuGCGCA------------UGUC-GUUGUGCGCG-GA------CGG- -5'
29543 3' -56.1 NC_006151.1 + 115043 0.66 0.899193
Target:  5'- aGGCGCGUGuuGCugUACGCGuCCgggggGCg -3'
miRNA:   3'- -CUGCGCAUguCGuuGUGCGC-GGa----CGg -5'
29543 3' -56.1 NC_006151.1 + 111548 0.66 0.899193
Target:  5'- uGGCGC--GCAGCGGcCGCGUGUCcacGCCc -3'
miRNA:   3'- -CUGCGcaUGUCGUU-GUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 120788 0.66 0.899193
Target:  5'- gGACGCGgccgAC-GCGGaGCGCGCC-GCg -3'
miRNA:   3'- -CUGCGCa---UGuCGUUgUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 125313 0.66 0.899193
Target:  5'- cACGgGcuCGGCGGaguuuGCGCGCCUGCa -3'
miRNA:   3'- cUGCgCauGUCGUUg----UGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 132155 0.66 0.899193
Target:  5'- uGACgGCGcGCAGCuGCGCG-GCCgGCa -3'
miRNA:   3'- -CUG-CGCaUGUCGuUGUGCgCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 122783 0.66 0.899193
Target:  5'- -uCGUGgGCGGCuGCGCG-GCCUcGCCc -3'
miRNA:   3'- cuGCGCaUGUCGuUGUGCgCGGA-CGG- -5'
29543 3' -56.1 NC_006151.1 + 139776 0.66 0.899193
Target:  5'- cGACGCGccccccgAUcgucugucggagAGC-GCGCGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCa------UG------------UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 90445 0.66 0.898545
Target:  5'- aGCGUGaUGCAGCGgguggacucgagcGCGCaGCGCCaGCa -3'
miRNA:   3'- cUGCGC-AUGUCGU-------------UGUG-CGCGGaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.