miRNA display CGI


Results 1 - 20 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 45524 0.66 0.950563
Target:  5'- gCCGUCgacccACCGCGGGagGGCCcgcuucccacgacgGCGCg -3'
miRNA:   3'- -GGCAGa----UGGUGUUCgaCCGGua------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 98020 0.66 0.950144
Target:  5'- gCCGgccagguCCGCGGGgUGGCgCA-GCGCg -3'
miRNA:   3'- -GGCagau---GGUGUUCgACCG-GUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 99956 0.66 0.950144
Target:  5'- gCGgCUACCGCAccaAGCUcGCC--GCGCu -3'
miRNA:   3'- gGCaGAUGGUGU---UCGAcCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 141635 0.66 0.950144
Target:  5'- gUCG-CUGCCGCGgcGGCgcggcggGGCCccGCGg -3'
miRNA:   3'- -GGCaGAUGGUGU--UCGa------CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 32561 0.66 0.950144
Target:  5'- cCCGUCU-CC-CGGGCacccgcGGCCggGCGg -3'
miRNA:   3'- -GGCAGAuGGuGUUCGa-----CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 104212 0.66 0.950144
Target:  5'- aCCGUg-ACCACGGcGCUGgacGCCGUGUucGCc -3'
miRNA:   3'- -GGCAgaUGGUGUU-CGAC---CGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 128924 0.66 0.946259
Target:  5'- gUCGUCcgagcgcaccuccacGCC-CGAGCUGGCCuucagguaGCGCc -3'
miRNA:   3'- -GGCAGa--------------UGGuGUUCGACCGGua------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 97670 0.66 0.945816
Target:  5'- gCCGcggGCCACGcacgugacGCUGGCCAgccggucuUGCGUc -3'
miRNA:   3'- -GGCagaUGGUGUu-------CGACCGGU--------ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 135183 0.66 0.945816
Target:  5'- gCCGgCUGCCGCc-GCcgGGCCAgucccaGCGUc -3'
miRNA:   3'- -GGCaGAUGGUGuuCGa-CCGGUa-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 31685 0.66 0.945816
Target:  5'- gCCGg--GCCGcCGAGCcGGCC--GCGCc -3'
miRNA:   3'- -GGCagaUGGU-GUUCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 99599 0.66 0.945816
Target:  5'- gCCGagcGCCGCGccgGGCUGGCgCAcaGCGCc -3'
miRNA:   3'- -GGCagaUGGUGU---UCGACCG-GUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 126393 0.66 0.945816
Target:  5'- cCCGcgCUgcuggccaGCCGCGucggGGCgaUGGCCAcGCGCc -3'
miRNA:   3'- -GGCa-GA--------UGGUGU----UCG--ACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 139613 0.66 0.945816
Target:  5'- cCCGUCcgGgCGC-GGCUgggGGCCAUccgGCGCc -3'
miRNA:   3'- -GGCAGa-UgGUGuUCGA---CCGGUA---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 141411 0.66 0.945816
Target:  5'- uCCGgcgAUCgguGCGGGCgcGGCCcgGCGCg -3'
miRNA:   3'- -GGCagaUGG---UGUUCGa-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 106517 0.66 0.943104
Target:  5'- gCCGU--GCCggGCGcGCUGGCCAccuucaccgugcugGCGCg -3'
miRNA:   3'- -GGCAgaUGG--UGUuCGACCGGUa-------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 100684 0.66 0.941248
Target:  5'- cUCGUCgcgacgcuCCGCGAGacCUGGaCCGagGCGCg -3'
miRNA:   3'- -GGCAGau------GGUGUUC--GACC-GGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 2569 0.66 0.941248
Target:  5'- gCCGUCcACgguggggagCACGcGCUGGCgGUagGCGCg -3'
miRNA:   3'- -GGCAGaUG---------GUGUuCGACCGgUA--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 81985 0.66 0.941248
Target:  5'- cCCGggCUgcACCACGgcggccagGGC-GGCCGcgUGCGCc -3'
miRNA:   3'- -GGCa-GA--UGGUGU--------UCGaCCGGU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 128313 0.66 0.941248
Target:  5'- cCCGUCgucgaGCCAgCAcacguAGCcGGCCA-GCGUc -3'
miRNA:   3'- -GGCAGa----UGGU-GU-----UCGaCCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68002 0.66 0.941248
Target:  5'- gCCG-CgGCCACGGGCUcGGCg--GCGUc -3'
miRNA:   3'- -GGCaGaUGGUGUUCGA-CCGguaCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.