miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 83090 0.66 0.760302
Target:  5'- cCCACGcguGCaCCUCGAGC--GGGCg- -3'
miRNA:   3'- cGGUGCuu-CG-GGAGCUCGugCCCGag -5'
29544 3' -59.6 NC_006151.1 + 2626 0.66 0.760302
Target:  5'- gGUC-CGggGCCC---GGCGCGGGUgcUCa -3'
miRNA:   3'- -CGGuGCuuCGGGagcUCGUGCCCG--AG- -5'
29544 3' -59.6 NC_006151.1 + 24458 0.66 0.760302
Target:  5'- gGUCGCGcgcGAGCaCCUCGGGgGCGuuGGuCUCg -3'
miRNA:   3'- -CGGUGC---UUCG-GGAGCUCgUGC--CC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 74601 0.66 0.760302
Target:  5'- cGCCgAUGAGGCgCCgcagggCGuGCACGuGCUCc -3'
miRNA:   3'- -CGG-UGCUUCG-GGa-----GCuCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 88779 0.66 0.760302
Target:  5'- gGUCGCGcgcucGCCCUCGAcGacgACGGGCg- -3'
miRNA:   3'- -CGGUGCuu---CGGGAGCU-Cg--UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 101515 0.66 0.760302
Target:  5'- gGCCACGGgcagaucacccaGGCCUUCGuGGCGCGccugcgcccGGCg- -3'
miRNA:   3'- -CGGUGCU------------UCGGGAGC-UCGUGC---------CCGag -5'
29544 3' -59.6 NC_006151.1 + 83429 0.66 0.760302
Target:  5'- cGCCGgGggGCuCCcCGGGCAgCGuGGC-Cg -3'
miRNA:   3'- -CGGUgCuuCG-GGaGCUCGU-GC-CCGaG- -5'
29544 3' -59.6 NC_006151.1 + 82711 0.66 0.760302
Target:  5'- gGCCAgGAGGCCCgCGAGgguCAgGaGGCg- -3'
miRNA:   3'- -CGGUgCUUCGGGaGCUC---GUgC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 92735 0.66 0.760302
Target:  5'- gGCCAUGcucacGCCggCGcGGCACGGGCa- -3'
miRNA:   3'- -CGGUGCuu---CGGgaGC-UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 81358 0.66 0.750896
Target:  5'- cGCC-CGggGCCCcggCGGGCGCcaGCg- -3'
miRNA:   3'- -CGGuGCuuCGGGa--GCUCGUGccCGag -5'
29544 3' -59.6 NC_006151.1 + 83180 0.66 0.750896
Target:  5'- cGUCGCGcgggcggcaGAGCUCgUUGAGCGCGaGGCa- -3'
miRNA:   3'- -CGGUGC---------UUCGGG-AGCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 135035 0.66 0.750896
Target:  5'- gGCCGCGucGUCCUCGGG-GCGGuccccCUCc -3'
miRNA:   3'- -CGGUGCuuCGGGAGCUCgUGCCc----GAG- -5'
29544 3' -59.6 NC_006151.1 + 38153 0.66 0.74995
Target:  5'- gGCCGCGGAcucugucGCCCUCGucgcccGCAcCGuGGCg- -3'
miRNA:   3'- -CGGUGCUU-------CGGGAGCu-----CGU-GC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 36259 0.66 0.74139
Target:  5'- gGCCGCcGGGUCCcccggUCGGGCucuccaucaGGGCUCc -3'
miRNA:   3'- -CGGUGcUUCGGG-----AGCUCGug-------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78222 0.66 0.74139
Target:  5'- nCCACGucGCUCaCGGGCGCGcagcGGUUCg -3'
miRNA:   3'- cGGUGCuuCGGGaGCUCGUGC----CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 117493 0.66 0.74139
Target:  5'- -aCACGuggAAGCgCUCGaAGCGCGGaCUCa -3'
miRNA:   3'- cgGUGC---UUCGgGAGC-UCGUGCCcGAG- -5'
29544 3' -59.6 NC_006151.1 + 121890 0.66 0.74139
Target:  5'- cGCUGCGccuGGCgCUCGcguacGCGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCu--UCGgGAGCu----CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 131539 0.66 0.74139
Target:  5'- uGCUcuuGCG-AGCgCCUCGGgcgccGCACGGGCc- -3'
miRNA:   3'- -CGG---UGCuUCG-GGAGCU-----CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 86099 0.66 0.74139
Target:  5'- cGCCAUGggGCCCgu--GUACGuguccGGCUa -3'
miRNA:   3'- -CGGUGCuuCGGGagcuCGUGC-----CCGAg -5'
29544 3' -59.6 NC_006151.1 + 18558 0.66 0.74139
Target:  5'- gGCCGCGAGGCCgCcCG-GCGgCGGGa-- -3'
miRNA:   3'- -CGGUGCUUCGG-GaGCuCGU-GCCCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.