Results 1 - 20 of 447 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29546 | 3' | -64.1 | NC_006151.1 | + | 78040 | 0.65 | 0.59668 |
Target: 5'- uCCcGGCgacgCGGCgcaucugGGCGaCGCGCgGCGggagCCu -3' miRNA: 3'- -GGuCCGa---GCCG-------CCGC-GCGCG-CGCa---GG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 111046 | 0.65 | 0.59668 |
Target: 5'- aCGGGCagGGCGcccucgaGCGUcuGCGCGgugauCGUCCg -3' miRNA: 3'- gGUCCGagCCGC-------CGCG--CGCGC-----GCAGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 52972 | 0.65 | 0.595724 |
Target: 5'- gCAGGCggcucauguacgCGcugaccucGCGGUGCGacgaguacagGCGCGUCCa -3' miRNA: 3'- gGUCCGa-----------GC--------CGCCGCGCg---------CGCGCAGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 85598 | 0.65 | 0.594767 |
Target: 5'- uCCA-GCUCGGCGcgcucgugcccaacGCGCcgccgcCGCGCGgcgCCa -3' miRNA: 3'- -GGUcCGAGCCGC--------------CGCGc-----GCGCGCa--GG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 88176 | 0.66 | 0.5919 |
Target: 5'- gCCgAGGUgguagacggugUCGGCGGCGUggucggaccaggcgaGgCGCGCcUCCg -3' miRNA: 3'- -GG-UCCG-----------AGCCGCCGCG---------------C-GCGCGcAGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 5096 | 0.66 | 0.5919 |
Target: 5'- gCGGGCgccggcggagacggUGGCGGCccgGCGCGgGCGa-- -3' miRNA: 3'- gGUCCGa-------------GCCGCCG---CGCGCgCGCagg -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 5915 | 0.66 | 0.588081 |
Target: 5'- gCCGGGgUCGGCGGC-CgGgGCcCGgagCCg -3' miRNA: 3'- -GGUCCgAGCCGCCGcG-CgCGcGCa--GG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 17908 | 0.66 | 0.588081 |
Target: 5'- aCCA-GCgCGGCGGCGCugauCGCGaCG-CCc -3' miRNA: 3'- -GGUcCGaGCCGCCGCGc---GCGC-GCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 60744 | 0.66 | 0.588081 |
Target: 5'- aCgAGGCagCGGCGGCuCGCGaagGCGgUCg -3' miRNA: 3'- -GgUCCGa-GCCGCCGcGCGCg--CGC-AGg -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 85247 | 0.66 | 0.588081 |
Target: 5'- gCCAGGCgcuGGCcgagGGCGgGCGCaucuCGUaCCg -3' miRNA: 3'- -GGUCCGag-CCG----CCGCgCGCGc---GCA-GG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 118152 | 0.66 | 0.588081 |
Target: 5'- gCCGcGGC--GGUGGCGCcgcugGUGCGCGgCCu -3' miRNA: 3'- -GGU-CCGagCCGCCGCG-----CGCGCGCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 133099 | 0.66 | 0.588081 |
Target: 5'- gCAGGaa--GCGGUcgaGCGC-CGCGUCCg -3' miRNA: 3'- gGUCCgagcCGCCG---CGCGcGCGCAGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 11347 | 0.66 | 0.588081 |
Target: 5'- gCGGGC-CGcccGCgGGCGCuacCGCGCGcUCCg -3' miRNA: 3'- gGUCCGaGC---CG-CCGCGc--GCGCGC-AGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 64417 | 0.66 | 0.588081 |
Target: 5'- aCAGGUcgcucUCGcuCuGCGCGCGCGUGgCCg -3' miRNA: 3'- gGUCCG-----AGCc-GcCGCGCGCGCGCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 74505 | 0.66 | 0.588081 |
Target: 5'- cCCAGaugagCGGgGGCaGCaGCGUGgCGUCCg -3' miRNA: 3'- -GGUCcga--GCCgCCG-CG-CGCGC-GCAGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 88901 | 0.66 | 0.588081 |
Target: 5'- cUCGGGgUCGGCGuCGgGCGagcggaaGCGcCCg -3' miRNA: 3'- -GGUCCgAGCCGCcGCgCGCg------CGCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 118203 | 0.66 | 0.578554 |
Target: 5'- gCCGGGCacgUGGCcguGGUG-GCGgGCGcCCg -3' miRNA: 3'- -GGUCCGa--GCCG---CCGCgCGCgCGCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 102929 | 0.66 | 0.578554 |
Target: 5'- gCCgAGGagCGGCuGCGCGCGCuggacgcgGCGcCCg -3' miRNA: 3'- -GG-UCCgaGCCGcCGCGCGCG--------CGCaGG- -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 25334 | 0.66 | 0.578554 |
Target: 5'- gCCGGGa-CGGcCGGCGUGC-CGCGa-- -3' miRNA: 3'- -GGUCCgaGCC-GCCGCGCGcGCGCagg -5' |
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29546 | 3' | -64.1 | NC_006151.1 | + | 97802 | 0.66 | 0.578554 |
Target: 5'- cUCAGGCgc-GCGGC-CGUGCGCcgGUCg -3' miRNA: 3'- -GGUCCGagcCGCCGcGCGCGCG--CAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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