miRNA display CGI


Results 41 - 60 of 447 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 130940 0.71 0.298543
Target:  5'- gCGGGggCGGCGgggggucGCGCGgGCGCGggggCCg -3'
miRNA:   3'- gGUCCgaGCCGC-------CGCGCgCGCGCa---GG- -5'
29546 3' -64.1 NC_006151.1 + 130839 0.72 0.276473
Target:  5'- --cGGCgcggagucgucgccgUCGGCGGCGCGgGCGgGaCCg -3'
miRNA:   3'- gguCCG---------------AGCCGCCGCGCgCGCgCaGG- -5'
29546 3' -64.1 NC_006151.1 + 130768 0.66 0.577603
Target:  5'- gCCAGGaa-GGUcccgucgGGCaUGuCGCGCGUCCa -3'
miRNA:   3'- -GGUCCgagCCG-------CCGcGC-GCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130725 0.66 0.559605
Target:  5'- -gGGGCcCGcGCGGcCGCgGCGCaGCG-CCa -3'
miRNA:   3'- ggUCCGaGC-CGCC-GCG-CGCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 130475 0.66 0.541768
Target:  5'- -aGGGCgauggccugccgcagCGcGCGGCGCcacacgcCGCGCGUCUc -3'
miRNA:   3'- ggUCCGa--------------GC-CGCCGCGc------GCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130400 0.71 0.312428
Target:  5'- gCCAGcGcCUCGcccGCGaGCGCGgGCGCG-CCg -3'
miRNA:   3'- -GGUC-C-GAGC---CGC-CGCGCgCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 130358 0.73 0.218576
Target:  5'- uCguGGUUgaCGGCcGCGCGCGCcgcgGCGUCCa -3'
miRNA:   3'- -GguCCGA--GCCGcCGCGCGCG----CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130289 0.71 0.312428
Target:  5'- gCGGGCgcgcgcCGGCcgacGGCGCggaGCGCGCGcgCCg -3'
miRNA:   3'- gGUCCGa-----GCCG----CCGCG---CGCGCGCa-GG- -5'
29546 3' -64.1 NC_006151.1 + 130121 0.75 0.157263
Target:  5'- cCCGGGUUCuGGCcGUGgGCGCGCG-CCa -3'
miRNA:   3'- -GGUCCGAG-CCGcCGCgCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 129863 0.72 0.250601
Target:  5'- cCCAGGC-CcGUGGCGuCGCGCGcCG-CCg -3'
miRNA:   3'- -GGUCCGaGcCGCCGC-GCGCGC-GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 129607 0.66 0.559605
Target:  5'- gCGGGCaCGuGCGcaccaGCGgGUcgaGCGCGUCCa -3'
miRNA:   3'- gGUCCGaGC-CGC-----CGCgCG---CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 129483 0.68 0.442322
Target:  5'- uCCAGGUccUCGGagGGCaGCGCGgGCG-Cg -3'
miRNA:   3'- -GGUCCG--AGCCg-CCG-CGCGCgCGCaGg -5'
29546 3' -64.1 NC_006151.1 + 129393 0.71 0.305756
Target:  5'- aCCA-GCUCugGGUGGCGCGCG-GCGUa- -3'
miRNA:   3'- -GGUcCGAG--CCGCCGCGCGCgCGCAgg -5'
29546 3' -64.1 NC_006151.1 + 129343 0.66 0.559605
Target:  5'- cCCGGGg-CGGcCGGCGCGCcgauaaauGCGCucgggguUCCg -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCG--------CGCGc------AGG- -5'
29546 3' -64.1 NC_006151.1 + 129226 0.67 0.503975
Target:  5'- gCAGGCa--GCuGGCGCGgGUGCGcCCc -3'
miRNA:   3'- gGUCCGagcCG-CCGCGCgCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 129025 0.7 0.36975
Target:  5'- --cGGCgUCGGCcGCGCGCGCGUacaCCu -3'
miRNA:   3'- gguCCG-AGCCGcCGCGCGCGCGca-GG- -5'
29546 3' -64.1 NC_006151.1 + 128784 0.74 0.194621
Target:  5'- uCCAcGGCcucggucgccUCGGCGaGCGCgGCGCGCGUggccCCg -3'
miRNA:   3'- -GGU-CCG----------AGCCGC-CGCG-CGCGCGCA----GG- -5'
29546 3' -64.1 NC_006151.1 + 128629 0.74 0.194621
Target:  5'- cCCAGGU--GGCGGaccaCGCGCGCGUCg -3'
miRNA:   3'- -GGUCCGagCCGCCgc--GCGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 128580 0.68 0.459516
Target:  5'- cUCGGGCgacaucgucUCGcGCGGCcCGCGCGCcaCCc -3'
miRNA:   3'- -GGUCCG---------AGC-CGCCGcGCGCGCGcaGG- -5'
29546 3' -64.1 NC_006151.1 + 128254 0.7 0.333104
Target:  5'- aUCAGGUgguggaagCGGCacuGCGCGCGCaGCG-CCg -3'
miRNA:   3'- -GGUCCGa-------GCCGc--CGCGCGCG-CGCaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.