Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29547 | 5' | -64.6 | NC_006151.1 | + | 28279 | 0.65 | 0.514263 |
Target: 5'- -cCCCGGGGAcgcgggcccgGCUCCcccauugGCCGGCgcguccccggggcgCCCGCc -3' miRNA: 3'- cuGGGCCCCU----------CGAGG-------UGGUCG--------------GGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 135169 | 0.66 | 0.512398 |
Target: 5'- cGGCCCGGacGGGCgCCggcugccgccgccggGCCAGUCCCAg -3' miRNA: 3'- -CUGGGCCc-CUCGaGG---------------UGGUCGGGGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 30784 | 0.66 | 0.508675 |
Target: 5'- aGGCUCaGGGuGUUCCAgCCgauGGCCCCGg -3' miRNA: 3'- -CUGGGcCCCuCGAGGU-GG---UCGGGGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 59853 | 0.66 | 0.508675 |
Target: 5'- -gUCCGGGGGGCgcagCUGCCgcAGCaCCGCu -3' miRNA: 3'- cuGGGCCCCUCGa---GGUGG--UCGgGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 103844 | 0.66 | 0.508675 |
Target: 5'- uGCUCGGGcGGCUgCGCgcgCAGCCCgACg -3' miRNA: 3'- cUGGGCCCcUCGAgGUG---GUCGGGgUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 22135 | 0.66 | 0.508675 |
Target: 5'- cACCUGcGGGucggagaucAGCgCCACCA-CCCCGCa -3' miRNA: 3'- cUGGGC-CCC---------UCGaGGUGGUcGGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 36329 | 0.66 | 0.499419 |
Target: 5'- -uCCCGGGccGGCUCCGggccCCGGCCgCCGa -3' miRNA: 3'- cuGGGCCCc-UCGAGGU----GGUCGG-GGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 46737 | 0.66 | 0.499419 |
Target: 5'- cGGCCCGGGGucGGCgaacaCCGCC-GCUUCGg -3' miRNA: 3'- -CUGGGCCCC--UCGa----GGUGGuCGGGGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 48293 | 0.66 | 0.499419 |
Target: 5'- cGCCCGuGGGAucGCgCUGCCAcCCCUACa -3' miRNA: 3'- cUGGGC-CCCU--CGaGGUGGUcGGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 67889 | 0.66 | 0.499419 |
Target: 5'- aGCCCGcGGGgcacAGCgCCAgCAGCCUCGg -3' miRNA: 3'- cUGGGC-CCC----UCGaGGUgGUCGGGGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 123770 | 0.66 | 0.499419 |
Target: 5'- gGGCCCcGGGGGCaUCgGCCcgGGCaCCACg -3' miRNA: 3'- -CUGGGcCCCUCG-AGgUGG--UCGgGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 40138 | 0.66 | 0.499419 |
Target: 5'- -gUCCGcGGcGGCgaCgGCCGGCCCCGCg -3' miRNA: 3'- cuGGGC-CCcUCGa-GgUGGUCGGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 64856 | 0.66 | 0.499419 |
Target: 5'- gGGCCuCGGcGGAGggCCGCU-GCCCgGCg -3' miRNA: 3'- -CUGG-GCC-CCUCgaGGUGGuCGGGgUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 109182 | 0.66 | 0.499419 |
Target: 5'- aGCUgGaGGGAGUcgucgugccUCUGCCGGCCUCGCc -3' miRNA: 3'- cUGGgC-CCCUCG---------AGGUGGUCGGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 13394 | 0.66 | 0.498498 |
Target: 5'- -cUCCGGGGAcGCgCCggccaaugggggaGCCGGgCCCGCg -3' miRNA: 3'- cuGGGCCCCU-CGaGG-------------UGGUCgGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 67755 | 0.66 | 0.493902 |
Target: 5'- cGGCCCcgucGGGGugcGGCgucgcguugagggcgUCCACguGCUCCACg -3' miRNA: 3'- -CUGGG----CCCC---UCG---------------AGGUGguCGGGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 121463 | 0.66 | 0.490239 |
Target: 5'- gGAgCUGGGGGGCaagCGCCcGCCCC-Cg -3' miRNA: 3'- -CUgGGCCCCUCGag-GUGGuCGGGGuG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 68522 | 0.66 | 0.490239 |
Target: 5'- --gCCGGGcAGCaCCACCAGCgcgcgcagguCCCGCg -3' miRNA: 3'- cugGGCCCcUCGaGGUGGUCG----------GGGUG- -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 46134 | 0.66 | 0.490239 |
Target: 5'- gGGCuCCGGGucuGGGuCUCgCGCCcGCCCCAg -3' miRNA: 3'- -CUG-GGCCC---CUC-GAG-GUGGuCGGGGUg -5' |
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29547 | 5' | -64.6 | NC_006151.1 | + | 38316 | 0.66 | 0.490239 |
Target: 5'- gGGCCCGcGGAGCccgcgCCcgGCCuGCcCCCGCu -3' miRNA: 3'- -CUGGGCcCCUCGa----GG--UGGuCG-GGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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