miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 28279 0.65 0.514263
Target:  5'- -cCCCGGGGAcgcgggcccgGCUCCcccauugGCCGGCgcguccccggggcgCCCGCc -3'
miRNA:   3'- cuGGGCCCCU----------CGAGG-------UGGUCG--------------GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 135169 0.66 0.512398
Target:  5'- cGGCCCGGacGGGCgCCggcugccgccgccggGCCAGUCCCAg -3'
miRNA:   3'- -CUGGGCCc-CUCGaGG---------------UGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 30784 0.66 0.508675
Target:  5'- aGGCUCaGGGuGUUCCAgCCgauGGCCCCGg -3'
miRNA:   3'- -CUGGGcCCCuCGAGGU-GG---UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 59853 0.66 0.508675
Target:  5'- -gUCCGGGGGGCgcagCUGCCgcAGCaCCGCu -3'
miRNA:   3'- cuGGGCCCCUCGa---GGUGG--UCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 103844 0.66 0.508675
Target:  5'- uGCUCGGGcGGCUgCGCgcgCAGCCCgACg -3'
miRNA:   3'- cUGGGCCCcUCGAgGUG---GUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 22135 0.66 0.508675
Target:  5'- cACCUGcGGGucggagaucAGCgCCACCA-CCCCGCa -3'
miRNA:   3'- cUGGGC-CCC---------UCGaGGUGGUcGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 36329 0.66 0.499419
Target:  5'- -uCCCGGGccGGCUCCGggccCCGGCCgCCGa -3'
miRNA:   3'- cuGGGCCCc-UCGAGGU----GGUCGG-GGUg -5'
29547 5' -64.6 NC_006151.1 + 46737 0.66 0.499419
Target:  5'- cGGCCCGGGGucGGCgaacaCCGCC-GCUUCGg -3'
miRNA:   3'- -CUGGGCCCC--UCGa----GGUGGuCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 48293 0.66 0.499419
Target:  5'- cGCCCGuGGGAucGCgCUGCCAcCCCUACa -3'
miRNA:   3'- cUGGGC-CCCU--CGaGGUGGUcGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 67889 0.66 0.499419
Target:  5'- aGCCCGcGGGgcacAGCgCCAgCAGCCUCGg -3'
miRNA:   3'- cUGGGC-CCC----UCGaGGUgGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 123770 0.66 0.499419
Target:  5'- gGGCCCcGGGGGCaUCgGCCcgGGCaCCACg -3'
miRNA:   3'- -CUGGGcCCCUCG-AGgUGG--UCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 40138 0.66 0.499419
Target:  5'- -gUCCGcGGcGGCgaCgGCCGGCCCCGCg -3'
miRNA:   3'- cuGGGC-CCcUCGa-GgUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 64856 0.66 0.499419
Target:  5'- gGGCCuCGGcGGAGggCCGCU-GCCCgGCg -3'
miRNA:   3'- -CUGG-GCC-CCUCgaGGUGGuCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 109182 0.66 0.499419
Target:  5'- aGCUgGaGGGAGUcgucgugccUCUGCCGGCCUCGCc -3'
miRNA:   3'- cUGGgC-CCCUCG---------AGGUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 13394 0.66 0.498498
Target:  5'- -cUCCGGGGAcGCgCCggccaaugggggaGCCGGgCCCGCg -3'
miRNA:   3'- cuGGGCCCCU-CGaGG-------------UGGUCgGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 67755 0.66 0.493902
Target:  5'- cGGCCCcgucGGGGugcGGCgucgcguugagggcgUCCACguGCUCCACg -3'
miRNA:   3'- -CUGGG----CCCC---UCG---------------AGGUGguCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 121463 0.66 0.490239
Target:  5'- gGAgCUGGGGGGCaagCGCCcGCCCC-Cg -3'
miRNA:   3'- -CUgGGCCCCUCGag-GUGGuCGGGGuG- -5'
29547 5' -64.6 NC_006151.1 + 68522 0.66 0.490239
Target:  5'- --gCCGGGcAGCaCCACCAGCgcgcgcagguCCCGCg -3'
miRNA:   3'- cugGGCCCcUCGaGGUGGUCG----------GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 46134 0.66 0.490239
Target:  5'- gGGCuCCGGGucuGGGuCUCgCGCCcGCCCCAg -3'
miRNA:   3'- -CUG-GGCCC---CUC-GAG-GUGGuCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 38316 0.66 0.490239
Target:  5'- gGGCCCGcGGAGCccgcgCCcgGCCuGCcCCCGCu -3'
miRNA:   3'- -CUGGGCcCCUCGa----GG--UGGuCG-GGGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.