miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 3' -62.9 NC_006151.1 + 29602 0.66 0.603075
Target:  5'- gGCCGCggcggcgGGGGCUGgUGuGGGAGGaGUg -3'
miRNA:   3'- gCGGUGa------CCCCGGC-GC-CCCUCUaCAg -5'
29548 3' -62.9 NC_006151.1 + 71676 0.66 0.593285
Target:  5'- gCGCCAC--GGGCCGCGugccGAGcGUGUCg -3'
miRNA:   3'- -GCGGUGacCCCGGCGCcc--CUC-UACAG- -5'
29548 3' -62.9 NC_006151.1 + 45043 0.66 0.593285
Target:  5'- gGaaGCgugGGGGgUGUGGGGGGAUGg- -3'
miRNA:   3'- gCggUGa--CCCCgGCGCCCCUCUACag -5'
29548 3' -62.9 NC_006151.1 + 126396 0.66 0.593285
Target:  5'- gCGCUGCUGGccaGCCGCgucGGGGcGAUGg- -3'
miRNA:   3'- -GCGGUGACCc--CGGCG---CCCCuCUACag -5'
29548 3' -62.9 NC_006151.1 + 77533 0.66 0.583522
Target:  5'- gGCCGCgcguGGGCCGCcccgcaGGGGAGcgacgacGUCu -3'
miRNA:   3'- gCGGUGac--CCCGGCG------CCCCUCua-----CAG- -5'
29548 3' -62.9 NC_006151.1 + 138627 0.66 0.582547
Target:  5'- aCGCCGCcGGGGgCGCGccggacuGGGAGGc--- -3'
miRNA:   3'- -GCGGUGaCCCCgGCGC-------CCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 64618 0.66 0.573791
Target:  5'- gCGCCGCgccgccGGCCGCGGGGcGcgG-Cg -3'
miRNA:   3'- -GCGGUGacc---CCGGCGCCCCuCuaCaG- -5'
29548 3' -62.9 NC_006151.1 + 22199 0.66 0.573791
Target:  5'- aCGuCCGC-GGGGCCGacgaaGGGcGAGGggaccGUCg -3'
miRNA:   3'- -GC-GGUGaCCCCGGCg----CCC-CUCUa----CAG- -5'
29548 3' -62.9 NC_006151.1 + 31643 0.66 0.573791
Target:  5'- aGCgCAC-GcGGGCgCGCGGGGAGGg--- -3'
miRNA:   3'- gCG-GUGaC-CCCG-GCGCCCCUCUacag -5'
29548 3' -62.9 NC_006151.1 + 31982 0.66 0.56797
Target:  5'- cCGCCGcCUGGGaGCCGgCGaGGAGGacaaaaagaguucugUGUCc -3'
miRNA:   3'- -GCGGU-GACCC-CGGC-GCcCCUCU---------------ACAG- -5'
29548 3' -62.9 NC_006151.1 + 89883 0.66 0.564098
Target:  5'- gCGCCGCUcGGGCUcgGCGGuGGGGucggcGUCc -3'
miRNA:   3'- -GCGGUGAcCCCGG--CGCC-CCUCua---CAG- -5'
29548 3' -62.9 NC_006151.1 + 130929 0.66 0.564098
Target:  5'- gGcCCGCgggggcgGGGGCgGCGGGGg---GUCg -3'
miRNA:   3'- gC-GGUGa------CCCCGgCGCCCCucuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 18151 0.66 0.554449
Target:  5'- uGUCgGCgGGGGCgGCGGcGGGcAUGUCg -3'
miRNA:   3'- gCGG-UGaCCCCGgCGCC-CCUcUACAG- -5'
29548 3' -62.9 NC_006151.1 + 90280 0.66 0.553487
Target:  5'- gCGCCgacgaGCUGGaGGCCcaugcacGCGGGGAuGAaccgGUCc -3'
miRNA:   3'- -GCGG-----UGACC-CCGG-------CGCCCCU-CUa---CAG- -5'
29548 3' -62.9 NC_006151.1 + 28372 0.67 0.544849
Target:  5'- uCGCCAaugGGGGCaCGUGGGGcccGUGg- -3'
miRNA:   3'- -GCGGUga-CCCCG-GCGCCCCuc-UACag -5'
29548 3' -62.9 NC_006151.1 + 113675 0.67 0.536256
Target:  5'- uCGCCGCcgagaaccgcuucgaGGGGCgcgugUGCGGGGAGcUGUg -3'
miRNA:   3'- -GCGGUGa--------------CCCCG-----GCGCCCCUCuACAg -5'
29548 3' -62.9 NC_006151.1 + 713 0.67 0.535304
Target:  5'- cCGUCGCaccgGGGGuCCGCGGGcGGGGg--- -3'
miRNA:   3'- -GCGGUGa---CCCC-GGCGCCC-CUCUacag -5'
29548 3' -62.9 NC_006151.1 + 129528 0.67 0.535304
Target:  5'- cCGCCgACgggGGGGCC-CGGGGccGccGUCa -3'
miRNA:   3'- -GCGG-UGa--CCCCGGcGCCCCu-CuaCAG- -5'
29548 3' -62.9 NC_006151.1 + 89553 0.67 0.525818
Target:  5'- gGCCGgUGGaGGCCGCGaGGcuGAUGg- -3'
miRNA:   3'- gCGGUgACC-CCGGCGC-CCcuCUACag -5'
29548 3' -62.9 NC_006151.1 + 84820 0.67 0.525818
Target:  5'- gGCCGCggacGGGGCCGCGaGGuGcAGAUcGcCa -3'
miRNA:   3'- gCGGUGa---CCCCGGCGC-CC-C-UCUA-CaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.