miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 5' -56.5 NC_006151.1 + 50665 0.66 0.891493
Target:  5'- -aGUCgUgCGCGGCcgcacccccgCGCcgCCGCGGCa -3'
miRNA:   3'- acUAG-AgGUGCCGa---------GCGuaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 74639 0.66 0.891493
Target:  5'- aGGUCcuuguaCACGGCggCGCAgUCCucggGCAGCu -3'
miRNA:   3'- aCUAGag----GUGCCGa-GCGU-AGG----CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 67781 0.66 0.891493
Target:  5'- uUGAgggCgUCCACGuGCUCcacgcgGCAcUCGCGGCa -3'
miRNA:   3'- -ACUa--G-AGGUGC-CGAG------CGUaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 5022 0.66 0.891493
Target:  5'- cGggCUCCGgGGC-CGgGgccggggaggCCGCGGCg -3'
miRNA:   3'- aCuaGAGGUgCCGaGCgUa---------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 99031 0.66 0.889467
Target:  5'- -cGUCUCCGCGGCccucgCGCAcggggacgcguacgUgCGCgAGCu -3'
miRNA:   3'- acUAGAGGUGCCGa----GCGU--------------AgGCG-UCG- -5'
29548 5' -56.5 NC_006151.1 + 59939 0.66 0.885355
Target:  5'- -cGUCagCgGCGGCUCGCAgcccucgagcgccacCCGCAGg -3'
miRNA:   3'- acUAGa-GgUGCCGAGCGUa--------------GGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 4786 0.66 0.884662
Target:  5'- cGggCccggCCGCGGCgcgguaGCGggCCGCGGCc -3'
miRNA:   3'- aCuaGa---GGUGCCGag----CGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 68152 0.66 0.884662
Target:  5'- gUGGUCguggUCACGGCcgccaccagCGCGUagGCGGCg -3'
miRNA:   3'- -ACUAGa---GGUGCCGa--------GCGUAggCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 117658 0.66 0.884662
Target:  5'- ---gCUCCGgGGCguccagGCA-CCGCGGCg -3'
miRNA:   3'- acuaGAGGUgCCGag----CGUaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 131111 0.66 0.884662
Target:  5'- gGggCccggCCGCGGCgcgggaggcCGCGgcgCCGCGGCc -3'
miRNA:   3'- aCuaGa---GGUGCCGa--------GCGUa--GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 104834 0.66 0.884662
Target:  5'- cGGccUCgCCGCGGCggagGCGgaccaggCCGCGGCg -3'
miRNA:   3'- aCU--AGaGGUGCCGag--CGUa------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 94026 0.66 0.884662
Target:  5'- -----gCCGCGcgcacguagcGCUCGCGcgCCGCGGCg -3'
miRNA:   3'- acuagaGGUGC----------CGAGCGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 113262 0.66 0.884662
Target:  5'- cGAgggCUUCcUGGCcCGCAacaccgCCGCGGCg -3'
miRNA:   3'- aCUa--GAGGuGCCGaGCGUa-----GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 69036 0.66 0.877606
Target:  5'- ---gCUCCGCGGUg-GCGUCaaagaccgGCAGCg -3'
miRNA:   3'- acuaGAGGUGCCGagCGUAGg-------CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 81010 0.66 0.877606
Target:  5'- cGGUCUCCA-GGaUCGUGcCCGCGGa -3'
miRNA:   3'- aCUAGAGGUgCCgAGCGUaGGCGUCg -5'
29548 5' -56.5 NC_006151.1 + 91101 0.66 0.877606
Target:  5'- aGGUCgucccggCCGCGGCgcccuUCGCcaCgGCGGCg -3'
miRNA:   3'- aCUAGa------GGUGCCG-----AGCGuaGgCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 723 0.66 0.877606
Target:  5'- gGGggUCCGCgGGCgggggcuucCGC-UCCGCGGCg -3'
miRNA:   3'- aCUagAGGUG-CCGa--------GCGuAGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 141836 0.66 0.876888
Target:  5'- gGGUC-CCGCgcucgacgcgaggGGCUCGCG-CCGC-GCc -3'
miRNA:   3'- aCUAGaGGUG-------------CCGAGCGUaGGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 132303 0.66 0.876168
Target:  5'- cUGGUCcgcgugcaggcgCCACGagaGCUCGCGcgCCGUGGCc -3'
miRNA:   3'- -ACUAGa-----------GGUGC---CGAGCGUa-GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 95792 0.66 0.87033
Target:  5'- aUGuUCagCACGGCgCGaCGUCCGCGuGCc -3'
miRNA:   3'- -ACuAGagGUGCCGaGC-GUAGGCGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.