miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 10916 0.66 0.634718
Target:  5'- aCCGGGGUcGGgcccacggcgccgagGGUGggCGCGCgUGUc -3'
miRNA:   3'- gGGCCCCGaCCa--------------CCACgaGCGCG-ACG- -5'
29551 5' -62.6 NC_006151.1 + 115564 0.66 0.633739
Target:  5'- gCCCGcGGGCgggcgcgcGGgcaGGUcgcgcucgagcaGCUCGCGCgugGCc -3'
miRNA:   3'- -GGGC-CCCGa-------CCa--CCA------------CGAGCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 41317 0.66 0.633739
Target:  5'- --gGGGGggGGUGGUGgUgGUGUUGUu -3'
miRNA:   3'- gggCCCCgaCCACCACgAgCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 122175 0.66 0.623949
Target:  5'- gCgGcGGGCUcGUGGUGC-CGCcggaGCUGUa -3'
miRNA:   3'- gGgC-CCCGAcCACCACGaGCG----CGACG- -5'
29551 5' -62.6 NC_006151.1 + 43244 0.66 0.618078
Target:  5'- aCCGGGGagugcgugcgggugUGG-GGUGCUCuCGCUcuGCu -3'
miRNA:   3'- gGGCCCCg-------------ACCaCCACGAGcGCGA--CG- -5'
29551 5' -62.6 NC_006151.1 + 42259 0.66 0.614165
Target:  5'- cCCCGGGGagcggggGGUGGga-UCGCGa-GCc -3'
miRNA:   3'- -GGGCCCCga-----CCACCacgAGCGCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 2200 0.66 0.614165
Target:  5'- cCCCGcGGGCcGGUGG-GuCUCcacgGCGCccccgGCg -3'
miRNA:   3'- -GGGC-CCCGaCCACCaC-GAG----CGCGa----CG- -5'
29551 5' -62.6 NC_006151.1 + 89966 0.66 0.604394
Target:  5'- aCCGGGcgcgGCUGGcgacguaGGUGCaCGUGCcGCg -3'
miRNA:   3'- gGGCCC----CGACCa------CCACGaGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 74558 0.66 0.604394
Target:  5'- uCCUGGGGCUGGUugcccagcgGGUcCcCGgGCaGCg -3'
miRNA:   3'- -GGGCCCCGACCA---------CCAcGaGCgCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 121726 0.66 0.598539
Target:  5'- uCCUGGGGCaGGUGcagacguacGUGUUuCacuggagaugcugaaGCGCUGCg -3'
miRNA:   3'- -GGGCCCCGaCCAC---------CACGA-G---------------CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 3453 0.66 0.59464
Target:  5'- gUCGGGcGC-GG-GGUGCUCGgGCauggGCc -3'
miRNA:   3'- gGGCCC-CGaCCaCCACGAGCgCGa---CG- -5'
29551 5' -62.6 NC_006151.1 + 5871 0.66 0.59464
Target:  5'- gCCCGGGGCcgccgGG-GGccccgGcCUCuGCcGCUGCg -3'
miRNA:   3'- -GGGCCCCGa----CCaCCa----C-GAG-CG-CGACG- -5'
29551 5' -62.6 NC_006151.1 + 84728 0.66 0.59464
Target:  5'- gCCGaGGcGCUcGUGGUGCUCgaggagacgGCGC-GCg -3'
miRNA:   3'- gGGC-CC-CGAcCACCACGAG---------CGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 135097 0.66 0.59464
Target:  5'- -gCGGGGCcGGgcgGGcgGCgguagCGCGCgggGCg -3'
miRNA:   3'- ggGCCCCGaCCa--CCa-CGa----GCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 103462 0.66 0.584913
Target:  5'- gCCCGugccGGGCac--GGUGCUCgcgGCGCUGUg -3'
miRNA:   3'- -GGGC----CCCGaccaCCACGAG---CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 121429 0.66 0.584913
Target:  5'- uCgCGGGGCUcgcgccGGccucgcUGGUGCcCGCGgaGCu -3'
miRNA:   3'- -GgGCCCCGA------CC------ACCACGaGCGCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 71787 0.66 0.584913
Target:  5'- gCgGGGGCUGccgcaccagcUGGccgaGCUCGCGCgugGCg -3'
miRNA:   3'- gGgCCCCGACc---------ACCa---CGAGCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 129542 0.67 0.579091
Target:  5'- gCCCGGGGCcGccgucaaccgcagcUGGcGCaugacggcgUCGCGCUGCu -3'
miRNA:   3'- -GGGCCCCGaCc-------------ACCaCG---------AGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 57833 0.67 0.575216
Target:  5'- cCCCGcggaGGGCgcacgGGUGCUCcacgGCGCUGg -3'
miRNA:   3'- -GGGC----CCCGacca-CCACGAG----CGCGACg -5'
29551 5' -62.6 NC_006151.1 + 49241 0.67 0.575216
Target:  5'- cCCCGcucGGCUGGgcgcgGCUCGUGC-GCg -3'
miRNA:   3'- -GGGCc--CCGACCacca-CGAGCGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.