miRNA display CGI


Results 1 - 20 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 48867 0.66 0.422139
Target:  5'- uGgaGCCCgagaucgccaaGCCGuacgcGCGCCugCGCUGGCCg -3'
miRNA:   3'- uCgaCGGG-----------CGGCc----CGUGG--GCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 65918 0.66 0.422139
Target:  5'- cGUc-CUCGUCGGGCGCCCcgccGCcGGCCc -3'
miRNA:   3'- uCGacGGGCGGCCCGUGGG----CGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 5377 0.66 0.422139
Target:  5'- gGGCUGUCUcuGCgGgGGCGCCCcgccguccccgGCgaGGCCg -3'
miRNA:   3'- -UCGACGGG--CGgC-CCGUGGG-----------CGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 8347 0.66 0.422139
Target:  5'- cGC-GCCCGCCGGaCGCggaggCGCgaGGCCc -3'
miRNA:   3'- uCGaCGGGCGGCCcGUGg----GCGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 53933 0.66 0.422139
Target:  5'- gGGUUGUCCGCCGcGGCgagggacuugaACCaCGCcagcGGCg -3'
miRNA:   3'- -UCGACGGGCGGC-CCG-----------UGG-GCGa---CCGg -5'
29556 3' -66.9 NC_006151.1 + 64208 0.66 0.422139
Target:  5'- gGGCagGUCCgGCgUGGGCGCCUcgGCguacagGGCCg -3'
miRNA:   3'- -UCGa-CGGG-CG-GCCCGUGGG--CGa-----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 141602 0.66 0.422139
Target:  5'- gAGCcGCCCGgCGaGGCugCCGggaucgGGCg -3'
miRNA:   3'- -UCGaCGGGCgGC-CCGugGGCga----CCGg -5'
29556 3' -66.9 NC_006151.1 + 28223 0.66 0.422139
Target:  5'- ---cGCCCcgucgaggggGCCGGGCcgacggGCCCaUUGGCCg -3'
miRNA:   3'- ucgaCGGG----------CGGCCCG------UGGGcGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 120506 0.66 0.419657
Target:  5'- cGCUGCugcagcgcaaccagCUGCCGGcGCGgCUGCUGaCCa -3'
miRNA:   3'- uCGACG--------------GGCGGCC-CGUgGGCGACcGG- -5'
29556 3' -66.9 NC_006151.1 + 53657 0.66 0.417183
Target:  5'- cGGCggGCUCGUgGGGCacgcguagcuguagcGCCCgaGCUGcGCCu -3'
miRNA:   3'- -UCGa-CGGGCGgCCCG---------------UGGG--CGAC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 83448 0.66 0.4139
Target:  5'- cAGCgUGgCCGCCaGGC-CCaCGaaGGCCg -3'
miRNA:   3'- -UCG-ACgGGCGGcCCGuGG-GCgaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 39874 0.66 0.4139
Target:  5'- cGGCcccgaggGCCUGCCGGccgaguugcGCGCCUuCUGcGCCg -3'
miRNA:   3'- -UCGa------CGGGCGGCC---------CGUGGGcGAC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 113162 0.66 0.4139
Target:  5'- uGCUG-CUGCUGGGCAa-CG-UGGCCa -3'
miRNA:   3'- uCGACgGGCGGCCCGUggGCgACCGG- -5'
29556 3' -66.9 NC_006151.1 + 37640 0.66 0.4139
Target:  5'- -uCUGCCagCGCCGGGUccACgCGCcccacGGCCa -3'
miRNA:   3'- ucGACGG--GCGGCCCG--UGgGCGa----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 102895 0.66 0.4139
Target:  5'- gGGcCUGCgCCGCCucGUcgACUCGCUGGCg -3'
miRNA:   3'- -UC-GACG-GGCGGccCG--UGGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 113124 0.66 0.4139
Target:  5'- cGCgGaCgCCGCCGGGC-CCgGCUacGCCg -3'
miRNA:   3'- uCGaC-G-GGCGGCCCGuGGgCGAc-CGG- -5'
29556 3' -66.9 NC_006151.1 + 114117 0.66 0.4139
Target:  5'- cGGCUGCugccccacgugcgCCGCCgccgagccgcggcucGGGCgcagcgaccgcgcgGCCCucguGCUGGCCu -3'
miRNA:   3'- -UCGACG-------------GGCGG---------------CCCG--------------UGGG----CGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 118736 0.66 0.4139
Target:  5'- cGGCUaCgUGCUGGGC-CCgGC-GGCCg -3'
miRNA:   3'- -UCGAcGgGCGGCCCGuGGgCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 33207 0.66 0.4139
Target:  5'- cGGC-GCCCccggagcacGCgGGGCGCCCcgGCgGGCg -3'
miRNA:   3'- -UCGaCGGG---------CGgCCCGUGGG--CGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 135418 0.66 0.4139
Target:  5'- aGGCcucgugGCgCGCCaGGCACUccagguugCGCUGGCa -3'
miRNA:   3'- -UCGa-----CGgGCGGcCCGUGG--------GCGACCGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.