Results 1 - 20 of 365 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29556 | 3' | -66.9 | NC_006151.1 | + | 48867 | 0.66 | 0.422139 |
Target: 5'- uGgaGCCCgagaucgccaaGCCGuacgcGCGCCugCGCUGGCCg -3' miRNA: 3'- uCgaCGGG-----------CGGCc----CGUGG--GCGACCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 65918 | 0.66 | 0.422139 |
Target: 5'- cGUc-CUCGUCGGGCGCCCcgccGCcGGCCc -3' miRNA: 3'- uCGacGGGCGGCCCGUGGG----CGaCCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 5377 | 0.66 | 0.422139 |
Target: 5'- gGGCUGUCUcuGCgGgGGCGCCCcgccguccccgGCgaGGCCg -3' miRNA: 3'- -UCGACGGG--CGgC-CCGUGGG-----------CGa-CCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 8347 | 0.66 | 0.422139 |
Target: 5'- cGC-GCCCGCCGGaCGCggaggCGCgaGGCCc -3' miRNA: 3'- uCGaCGGGCGGCCcGUGg----GCGa-CCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 53933 | 0.66 | 0.422139 |
Target: 5'- gGGUUGUCCGCCGcGGCgagggacuugaACCaCGCcagcGGCg -3' miRNA: 3'- -UCGACGGGCGGC-CCG-----------UGG-GCGa---CCGg -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 64208 | 0.66 | 0.422139 |
Target: 5'- gGGCagGUCCgGCgUGGGCGCCUcgGCguacagGGCCg -3' miRNA: 3'- -UCGa-CGGG-CG-GCCCGUGGG--CGa-----CCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 141602 | 0.66 | 0.422139 |
Target: 5'- gAGCcGCCCGgCGaGGCugCCGggaucgGGCg -3' miRNA: 3'- -UCGaCGGGCgGC-CCGugGGCga----CCGg -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 28223 | 0.66 | 0.422139 |
Target: 5'- ---cGCCCcgucgaggggGCCGGGCcgacggGCCCaUUGGCCg -3' miRNA: 3'- ucgaCGGG----------CGGCCCG------UGGGcGACCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 120506 | 0.66 | 0.419657 |
Target: 5'- cGCUGCugcagcgcaaccagCUGCCGGcGCGgCUGCUGaCCa -3' miRNA: 3'- uCGACG--------------GGCGGCC-CGUgGGCGACcGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 53657 | 0.66 | 0.417183 |
Target: 5'- cGGCggGCUCGUgGGGCacgcguagcuguagcGCCCgaGCUGcGCCu -3' miRNA: 3'- -UCGa-CGGGCGgCCCG---------------UGGG--CGAC-CGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 83448 | 0.66 | 0.4139 |
Target: 5'- cAGCgUGgCCGCCaGGC-CCaCGaaGGCCg -3' miRNA: 3'- -UCG-ACgGGCGGcCCGuGG-GCgaCCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 39874 | 0.66 | 0.4139 |
Target: 5'- cGGCcccgaggGCCUGCCGGccgaguugcGCGCCUuCUGcGCCg -3' miRNA: 3'- -UCGa------CGGGCGGCC---------CGUGGGcGAC-CGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 113162 | 0.66 | 0.4139 |
Target: 5'- uGCUG-CUGCUGGGCAa-CG-UGGCCa -3' miRNA: 3'- uCGACgGGCGGCCCGUggGCgACCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 37640 | 0.66 | 0.4139 |
Target: 5'- -uCUGCCagCGCCGGGUccACgCGCcccacGGCCa -3' miRNA: 3'- ucGACGG--GCGGCCCG--UGgGCGa----CCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 102895 | 0.66 | 0.4139 |
Target: 5'- gGGcCUGCgCCGCCucGUcgACUCGCUGGCg -3' miRNA: 3'- -UC-GACG-GGCGGccCG--UGGGCGACCGg -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 113124 | 0.66 | 0.4139 |
Target: 5'- cGCgGaCgCCGCCGGGC-CCgGCUacGCCg -3' miRNA: 3'- uCGaC-G-GGCGGCCCGuGGgCGAc-CGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 114117 | 0.66 | 0.4139 |
Target: 5'- cGGCUGCugccccacgugcgCCGCCgccgagccgcggcucGGGCgcagcgaccgcgcgGCCCucguGCUGGCCu -3' miRNA: 3'- -UCGACG-------------GGCGG---------------CCCG--------------UGGG----CGACCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 118736 | 0.66 | 0.4139 |
Target: 5'- cGGCUaCgUGCUGGGC-CCgGC-GGCCg -3' miRNA: 3'- -UCGAcGgGCGGCCCGuGGgCGaCCGG- -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 33207 | 0.66 | 0.4139 |
Target: 5'- cGGC-GCCCccggagcacGCgGGGCGCCCcgGCgGGCg -3' miRNA: 3'- -UCGaCGGG---------CGgCCCGUGGG--CGaCCGg -5' |
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29556 | 3' | -66.9 | NC_006151.1 | + | 135418 | 0.66 | 0.4139 |
Target: 5'- aGGCcucgugGCgCGCCaGGCACUccagguugCGCUGGCa -3' miRNA: 3'- -UCGa-----CGgGCGGcCCGUGG--------GCGACCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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