miRNA display CGI


Results 21 - 40 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 3' -66.9 NC_006151.1 + 135476 0.69 0.271418
Target:  5'- cAGCgUGUCCGCgCGGGCcaggcgGCgCGC-GGCCu -3'
miRNA:   3'- -UCG-ACGGGCG-GCCCG------UGgGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 135418 0.66 0.4139
Target:  5'- aGGCcucgugGCgCGCCaGGCACUccagguugCGCUGGCa -3'
miRNA:   3'- -UCGa-----CGgGCGGcCCGUGG--------GCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 135164 0.77 0.070585
Target:  5'- gGGCgcgGCCCGgaCGGGCGCCgGCUGccGCCg -3'
miRNA:   3'- -UCGa--CGGGCg-GCCCGUGGgCGAC--CGG- -5'
29556 3' -66.9 NC_006151.1 + 134755 0.66 0.381956
Target:  5'- gAGCaGCgCGCgCGGG-GCCCGC-GGCUu -3'
miRNA:   3'- -UCGaCGgGCG-GCCCgUGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 134288 0.68 0.307579
Target:  5'- gGGCcGCCCa-CGGGCGCaauuuuauugcacgCCGCUGcGCCu -3'
miRNA:   3'- -UCGaCGGGcgGCCCGUG--------------GGCGAC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 134084 0.66 0.386642
Target:  5'- gAGCgaGCCCGUgaccguggacggaGGGCGgCUGCUGGUg -3'
miRNA:   3'- -UCGa-CGGGCGg------------CCCGUgGGCGACCGg -5'
29556 3' -66.9 NC_006151.1 + 133315 0.67 0.330145
Target:  5'- gGGCgGCCCGUguCGaGGCGCgCCGggcGGCCg -3'
miRNA:   3'- -UCGaCGGGCG--GC-CCGUG-GGCga-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 133232 0.68 0.32318
Target:  5'- cGC-GCCgCGCCaGGGCA--CGUUGGCCu -3'
miRNA:   3'- uCGaCGG-GCGG-CCCGUggGCGACCGG- -5'
29556 3' -66.9 NC_006151.1 + 132829 0.7 0.231251
Target:  5'- uGGCcGCCCGCgggacggccaccaCGGGCgGCCgGCccggGGCCg -3'
miRNA:   3'- -UCGaCGGGCG-------------GCCCG-UGGgCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 132757 0.67 0.330145
Target:  5'- uGGC-GCCCagcagcGCCGGGCcCUCGUcgaaGGCCa -3'
miRNA:   3'- -UCGaCGGG------CGGCCCGuGGGCGa---CCGG- -5'
29556 3' -66.9 NC_006151.1 + 132626 0.72 0.155522
Target:  5'- cGCUcgcGUCCGCCGucGGCGCCCGgaccugGGCCg -3'
miRNA:   3'- uCGA---CGGGCGGC--CCGUGGGCga----CCGG- -5'
29556 3' -66.9 NC_006151.1 + 132591 0.68 0.302946
Target:  5'- cGGCauggGCuCCGCCccGGGCACCCcCaGGUCg -3'
miRNA:   3'- -UCGa---CG-GGCGG--CCCGUGGGcGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 132165 0.67 0.366612
Target:  5'- cAGCUGCgCgGCC-GGCACCgGC-GcGCCc -3'
miRNA:   3'- -UCGACG-GgCGGcCCGUGGgCGaC-CGG- -5'
29556 3' -66.9 NC_006151.1 + 131597 0.69 0.242581
Target:  5'- cGGCaaaUGCCCccccuCCGGGCcgGCCCGC-GGCUu -3'
miRNA:   3'- -UCG---ACGGGc----GGCCCG--UGGGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 131548 0.68 0.296422
Target:  5'- gAGCgccucggGCgCCGCaCGGGC-CCCGCgucgcucauggUGGUCg -3'
miRNA:   3'- -UCGa------CG-GGCG-GCCCGuGGGCG-----------ACCGG- -5'
29556 3' -66.9 NC_006151.1 + 131105 0.69 0.24646
Target:  5'- cGGCgggggGCCCgGCCGcGGCGCgggaggccgcggcgCCGC-GGCCg -3'
miRNA:   3'- -UCGa----CGGG-CGGC-CCGUG--------------GGCGaCCGG- -5'
29556 3' -66.9 NC_006151.1 + 130766 0.66 0.40576
Target:  5'- uGGCcaggaagGuCCCGUCGGGCAugucgcgcgUCCaGCUGGCg -3'
miRNA:   3'- -UCGa------C-GGGCGGCCCGU---------GGG-CGACCGg -5'
29556 3' -66.9 NC_006151.1 + 130702 0.73 0.141224
Target:  5'- cGGggGCCCGacggggcggcCCGGGgGCCCGCgcGGCCg -3'
miRNA:   3'- -UCgaCGGGC----------GGCCCgUGGGCGa-CCGG- -5'
29556 3' -66.9 NC_006151.1 + 130631 0.67 0.351698
Target:  5'- cGGCUcacgaGCgCCGCCGaGGcCGCCUGC-GGCg -3'
miRNA:   3'- -UCGA-----CG-GGCGGC-CC-GUGGGCGaCCGg -5'
29556 3' -66.9 NC_006151.1 + 130274 0.71 0.19257
Target:  5'- cGCgGCCCcgagGCCgcGGGCGCgCGCcGGCCg -3'
miRNA:   3'- uCGaCGGG----CGG--CCCGUGgGCGaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.