miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 118176 0.66 0.881189
Target:  5'- cGCGGCCUgaccgUCGAGgcCGGCUucgccGGGCa -3'
miRNA:   3'- -UGCCGGA-----AGCUCauGCUGGuc---CUCGa -5'
29556 5' -56.8 NC_006151.1 + 104530 0.66 0.881189
Target:  5'- cGCGGCUUcccCGAGUACGagGCC--GAGCUg -3'
miRNA:   3'- -UGCCGGAa--GCUCAUGC--UGGucCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 12304 0.66 0.874039
Target:  5'- cGCGGUC--CGAGcuCGGCCAGGAGa- -3'
miRNA:   3'- -UGCCGGaaGCUCauGCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 21072 0.66 0.874039
Target:  5'- gGCGGCCa--GGGUcaggGCGGCgAGGAGg- -3'
miRNA:   3'- -UGCCGGaagCUCA----UGCUGgUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 52491 0.66 0.874039
Target:  5'- gACGGCC-UCGGGcGCcaGCCcGGGGCg -3'
miRNA:   3'- -UGCCGGaAGCUCaUGc-UGGuCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 81980 0.66 0.874039
Target:  5'- uACGGCC--CGGGcugcaccacgGCGGCCAGG-GCg -3'
miRNA:   3'- -UGCCGGaaGCUCa---------UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 84484 0.66 0.866673
Target:  5'- --cGCCUUCGAGgccgcUGCGAucCCGGGcAGCg -3'
miRNA:   3'- ugcCGGAAGCUC-----AUGCU--GGUCC-UCGa -5'
29556 5' -56.8 NC_006151.1 + 81497 0.66 0.866673
Target:  5'- cGCGGCCgucggCGAGagcGCGGCCcgcGuGAGCUc -3'
miRNA:   3'- -UGCCGGaa---GCUCa--UGCUGGu--C-CUCGA- -5'
29556 5' -56.8 NC_006151.1 + 133471 0.66 0.866673
Target:  5'- -aGGCCcgCGAG-GCGGCCGcGGGCg -3'
miRNA:   3'- ugCCGGaaGCUCaUGCUGGUcCUCGa -5'
29556 5' -56.8 NC_006151.1 + 21428 0.66 0.859096
Target:  5'- -gGGCC-UCGGGggucGCGGCguGGGGUg -3'
miRNA:   3'- ugCCGGaAGCUCa---UGCUGguCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 21474 0.66 0.859096
Target:  5'- cGCGucGCCggcUCGGGcagGCGGCCGgGGGGCg -3'
miRNA:   3'- -UGC--CGGa--AGCUCa--UGCUGGU-CCUCGa -5'
29556 5' -56.8 NC_006151.1 + 113085 0.66 0.851314
Target:  5'- cGCGGCCgUCGccgccGCcACCGGGGGCg -3'
miRNA:   3'- -UGCCGGaAGCuca--UGcUGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 15446 0.66 0.851314
Target:  5'- cGCGGCUcggugugCGAGgACGACgGGGAGg- -3'
miRNA:   3'- -UGCCGGaa-----GCUCaUGCUGgUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 122692 0.66 0.846548
Target:  5'- gGCGGCCguggagcucgcgcucUUCGGGcgGCGGCCc-GAGCa -3'
miRNA:   3'- -UGCCGG---------------AAGCUCa-UGCUGGucCUCGa -5'
29556 5' -56.8 NC_006151.1 + 123123 0.67 0.83516
Target:  5'- gGCGaGCCUggCGcAGUGCGugCGcGAGCa -3'
miRNA:   3'- -UGC-CGGAa-GC-UCAUGCugGUcCUCGa -5'
29556 5' -56.8 NC_006151.1 + 89599 0.67 0.83516
Target:  5'- gGCGGCCgu-GAGgacgAUGGCCgcgaggaugAGGAGCg -3'
miRNA:   3'- -UGCCGGaagCUCa---UGCUGG---------UCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 71623 0.67 0.826803
Target:  5'- cGCGGCCUUcucgcCGGGggggACGGuCgGGGGGCc -3'
miRNA:   3'- -UGCCGGAA-----GCUCa---UGCU-GgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 21392 0.67 0.826803
Target:  5'- gACGGCCggCGGG-GCGA--AGGGGCg -3'
miRNA:   3'- -UGCCGGaaGCUCaUGCUggUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 107272 0.67 0.825957
Target:  5'- cCGGCCaccUCGGaggagcuGUACGGCCGGccGAGCUu -3'
miRNA:   3'- uGCCGGa--AGCU-------CAUGCUGGUC--CUCGA- -5'
29556 5' -56.8 NC_006151.1 + 82696 0.67 0.818269
Target:  5'- gGCGGCCcccgCGAG---GGCCAGGAGg- -3'
miRNA:   3'- -UGCCGGaa--GCUCaugCUGGUCCUCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.