miRNA display CGI


Results 41 - 60 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 71071 0.75 0.125615
Target:  5'- -gCCGUGGUcuucuaccaccacGGCGCCGCGG-GCGCGGg -3'
miRNA:   3'- aaGGCGCCG-------------CUGCGGCGCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 37169 0.75 0.122874
Target:  5'- cUCCGcCGGCGccCGCCGCGGCccCGCGGc -3'
miRNA:   3'- aAGGC-GCCGCu-GCGGCGCCGc-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 58442 0.75 0.116983
Target:  5'- cUCgGUGGCGugcGCGCgCGCGGCGuCGCGGu -3'
miRNA:   3'- aAGgCGCCGC---UGCG-GCGCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 17472 0.75 0.116983
Target:  5'- -gCCGCGGCGuguccuCGUCgGCGGCGCGCc- -3'
miRNA:   3'- aaGGCGCCGCu-----GCGG-CGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 44392 0.74 0.138827
Target:  5'- -gCCGCGGgGGCGCCGaggagggaGGgGCGCGu -3'
miRNA:   3'- aaGGCGCCgCUGCGGCg-------CCgCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 123893 0.74 0.142238
Target:  5'- -gCCGCGGCccCGCCguGCGGCGCgGCGGc -3'
miRNA:   3'- aaGGCGCCGcuGCGG--CGCCGCG-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 90109 0.74 0.145373
Target:  5'- -gCCGCGGCGACGCCcaugacgaggcagGCGGgGCGg-- -3'
miRNA:   3'- aaGGCGCCGCUGCGG-------------CGCCgCGCgcu -5'
29557 5' -65.9 NC_006151.1 + 123234 0.74 0.136817
Target:  5'- gUUCCGCGcacggcgcgcguucuGCGAgGCCGcCGcGCGCGCGGg -3'
miRNA:   3'- -AAGGCGC---------------CGCUgCGGC-GC-CGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 130370 0.74 0.135492
Target:  5'- -gCCGC-GCG-CGCCGCGGCguccaGCGCGAa -3'
miRNA:   3'- aaGGCGcCGCuGCGGCGCCG-----CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 130273 0.74 0.145725
Target:  5'- --gCGCGGCcccGAgGCCGCgGGCGCGCGc -3'
miRNA:   3'- aagGCGCCG---CUgCGGCG-CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 104805 0.74 0.142238
Target:  5'- gUgCGCcGCGACcugGCgGCGGCGCGCGAc -3'
miRNA:   3'- aAgGCGcCGCUG---CGgCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 53942 0.74 0.141894
Target:  5'- -gCCGCGGCGAgggacuugaaccaCGCCaGCGGCG-GCGGc -3'
miRNA:   3'- aaGGCGCCGCU-------------GCGG-CGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 137097 0.74 0.129041
Target:  5'- cUUCGCGGUgcuggccgggGACGCCugGgGGCGCGCGAc -3'
miRNA:   3'- aAGGCGCCG----------CUGCGG--CgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 3678 0.74 0.142238
Target:  5'- -cCCGgGGCGGCGggccCCG-GGCGCGCGGc -3'
miRNA:   3'- aaGGCgCCGCUGC----GGCgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 106676 0.74 0.129041
Target:  5'- -gCCGCGGCGcucggcGCGCCG-GGCGCcgGCGAc -3'
miRNA:   3'- aaGGCGCCGC------UGCGGCgCCGCG--CGCU- -5'
29557 5' -65.9 NC_006151.1 + 26354 0.74 0.138827
Target:  5'- -gCgGCGGCGggccGCGUCGgGGCGCGCGu -3'
miRNA:   3'- aaGgCGCCGC----UGCGGCgCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 5090 0.74 0.135162
Target:  5'- -gCCGCGGCgGGCGCCggcggagacggugGCGGCccgGCGCGGg -3'
miRNA:   3'- aaGGCGCCG-CUGCGG-------------CGCCG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 102381 0.74 0.138827
Target:  5'- -cCCGUGGCcaagcuGGCGCugguCGCGGCGCGCGu -3'
miRNA:   3'- aaGGCGCCG------CUGCG----GCGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 30339 0.74 0.13223
Target:  5'- ---gGCGGCGGCGgCGCGaGgGCGCGAa -3'
miRNA:   3'- aaggCGCCGCUGCgGCGC-CgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 58983 0.74 0.140182
Target:  5'- cUCCGCGggcacgagcgagagcGCGGCGuCCaGCGGCGCGuCGAa -3'
miRNA:   3'- aAGGCGC---------------CGCUGC-GG-CGCCGCGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.