miRNA display CGI


Results 1 - 20 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29558 3' -55.8 NC_006151.1 + 130629 0.66 0.920232
Target:  5'- cGCGGC-UCA-CGagcGCCGC--CGAGGCCg -3'
miRNA:   3'- -UGCUGaAGUaGU---CGGCGcuGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 80687 0.66 0.920232
Target:  5'- cUGGgUUCG-CGGCC-CGGCGcGGGCCu -3'
miRNA:   3'- uGCUgAAGUaGUCGGcGCUGC-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 68858 0.66 0.920232
Target:  5'- cGCGACg-CGUcCAGCaGCGcCGGGGCg -3'
miRNA:   3'- -UGCUGaaGUA-GUCGgCGCuGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 62593 0.66 0.920232
Target:  5'- gACGAgUUUGaCGaCgGCGACGAGGUCg -3'
miRNA:   3'- -UGCUgAAGUaGUcGgCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 49925 0.66 0.920232
Target:  5'- gGCGGCUgacggacacgaUCcgCcgggaccuGGCCGCGGCccuGGCCg -3'
miRNA:   3'- -UGCUGA-----------AGuaG--------UCGGCGCUGcu-CCGG- -5'
29558 3' -55.8 NC_006151.1 + 66605 0.66 0.920232
Target:  5'- uCGACUUCG-CcGCCuacgaCGGCGAGcGCCu -3'
miRNA:   3'- uGCUGAAGUaGuCGGc----GCUGCUC-CGG- -5'
29558 3' -55.8 NC_006151.1 + 46587 0.66 0.920232
Target:  5'- cCGACggg--CGGCCGUGcUGAGGCg -3'
miRNA:   3'- uGCUGaaguaGUCGGCGCuGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 137130 0.66 0.920232
Target:  5'- cGCGACggCG-CGG-CGCGACGcGGCg -3'
miRNA:   3'- -UGCUGaaGUaGUCgGCGCUGCuCCGg -5'
29558 3' -55.8 NC_006151.1 + 64928 0.66 0.91967
Target:  5'- cACGGCguacucgcgCGUCagcgccuGGCCGCGcugcggGCGcAGGCCg -3'
miRNA:   3'- -UGCUGaa-------GUAG-------UCGGCGC------UGC-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 98622 0.66 0.914506
Target:  5'- aGCGAgUggugC-GCCGCcuucGACGAGGCCc -3'
miRNA:   3'- -UGCUgAaguaGuCGGCG----CUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 8474 0.66 0.914506
Target:  5'- -gGACggaUgGUCGGUCG-GACGGGGCg -3'
miRNA:   3'- ugCUGa--AgUAGUCGGCgCUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 48084 0.66 0.914506
Target:  5'- -gGAUa-CAcCAGCCGCGAUGucGCCg -3'
miRNA:   3'- ugCUGaaGUaGUCGGCGCUGCucCGG- -5'
29558 3' -55.8 NC_006151.1 + 81286 0.66 0.914506
Target:  5'- -gGAUcUCGggcgCGGCgcgCGCGACGGGGUCc -3'
miRNA:   3'- ugCUGaAGUa---GUCG---GCGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 2332 0.66 0.914506
Target:  5'- gGCGGCcucggCGUCGggcuccagcagcGCCGCGGCGcagaAGGCg -3'
miRNA:   3'- -UGCUGaa---GUAGU------------CGGCGCUGC----UCCGg -5'
29558 3' -55.8 NC_006151.1 + 11870 0.66 0.914506
Target:  5'- uCGACUcgCGUC-GCgGCGAUucGGGCCg -3'
miRNA:   3'- uGCUGAa-GUAGuCGgCGCUGc-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 61759 0.66 0.914506
Target:  5'- cGCGGucgCGggGGCCGUGgugcugcggcGCGAGGCCg -3'
miRNA:   3'- -UGCUgaaGUagUCGGCGC----------UGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 68265 0.66 0.914506
Target:  5'- cGCGGCga---CGGUCGCGGCGccGGGCg -3'
miRNA:   3'- -UGCUGaaguaGUCGGCGCUGC--UCCGg -5'
29558 3' -55.8 NC_006151.1 + 66746 0.66 0.914506
Target:  5'- cGCGGCgcuccUUCcgCGacGCCGCGAC--GGCCg -3'
miRNA:   3'- -UGCUG-----AAGuaGU--CGGCGCUGcuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 46275 0.66 0.914506
Target:  5'- gAUGAac-CGcCAGCgCGUGAcCGAGGCCa -3'
miRNA:   3'- -UGCUgaaGUaGUCG-GCGCU-GCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 84634 0.66 0.912149
Target:  5'- cGCGGCgcuggacaacgcCAU-GGCCGCGGgcgcgcgccuCGAGGCCg -3'
miRNA:   3'- -UGCUGaa----------GUAgUCGGCGCU----------GCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.