miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 129971 0.66 0.99826
Target:  5'- cGCGAGCgCAcggcgcggAAGGCCUcGUcgUCggggAUGUCCg -3'
miRNA:   3'- -CGCUCG-GU--------UUCUGGAaCA--AG----UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 109113 0.66 0.99826
Target:  5'- gGCGAGCCGccGGCC-----CGCGcCCg -3'
miRNA:   3'- -CGCUCGGUuuCUGGaacaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 101606 0.66 0.99826
Target:  5'- gGUGGGCC-GGGGCCUucgUGUUCu--UCCu -3'
miRNA:   3'- -CGCUCGGuUUCUGGA---ACAAGugcAGG- -5'
29561 3' -49.6 NC_006151.1 + 46388 0.66 0.998195
Target:  5'- gGCGAGCCccgauGAGccACCagggUGUgaacuauaucgaCACGUCCg -3'
miRNA:   3'- -CGCUCGGu----UUC--UGGa---ACAa-----------GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 13473 0.66 0.998059
Target:  5'- cGCGGGCC--GGACCgccccgccgacUCGgGUCCu -3'
miRNA:   3'- -CGCUCGGuuUCUGGaaca-------AGUgCAGG- -5'
29561 3' -49.6 NC_006151.1 + 26359 0.66 0.997914
Target:  5'- gGCGGGCCGcgucGGGGCg-----CGCGUCCc -3'
miRNA:   3'- -CGCUCGGU----UUCUGgaacaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 4360 0.66 0.997914
Target:  5'- cGCGGGCgcaGAGGGCCUcGacggUCGCcUCCc -3'
miRNA:   3'- -CGCUCGg--UUUCUGGAaCa---AGUGcAGG- -5'
29561 3' -49.6 NC_006151.1 + 28288 0.66 0.997914
Target:  5'- cGCGGGCCc--GGCUcccccaUUGgccggCGCGUCCc -3'
miRNA:   3'- -CGCUCGGuuuCUGG------AACaa---GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 28848 0.66 0.997914
Target:  5'- cGCGGGCCc--GGCUcccccaUUGgccggCGCGUCCc -3'
miRNA:   3'- -CGCUCGGuuuCUGG------AACaa---GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 123157 0.66 0.997914
Target:  5'- cGCGAGCUggaGAAGACCcUG--CGCGUg- -3'
miRNA:   3'- -CGCUCGG---UUUCUGGaACaaGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 117072 0.66 0.997513
Target:  5'- uCGAGCagcAGGCgCgUGgUCGCGUCCa -3'
miRNA:   3'- cGCUCGguuUCUG-GaACaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 103015 0.66 0.997513
Target:  5'- cGUGAGCaCGgacgagcgccucGGGGCCUgGUUCGCG-CUg -3'
miRNA:   3'- -CGCUCG-GU------------UUCUGGAaCAAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 115810 0.66 0.997513
Target:  5'- cGCGcGCgGAuGGCCUUGcgCAUGgCCa -3'
miRNA:   3'- -CGCuCGgUUuCUGGAACaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 121914 0.66 0.997513
Target:  5'- cGCGGGCCGAgggGGACCgcGUgCugGgggcgcuggCCg -3'
miRNA:   3'- -CGCUCGGUU---UCUGGaaCAaGugCa--------GG- -5'
29561 3' -49.6 NC_006151.1 + 67858 0.66 0.997049
Target:  5'- gGCGAGCCGGc-GCCgagGUggcgCGCGcgCCa -3'
miRNA:   3'- -CGCUCGGUUucUGGaa-CAa---GUGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 40105 0.66 0.997049
Target:  5'- gGCGAGgaCGGGGACUcUGUggagaucgUCGgCGUCCg -3'
miRNA:   3'- -CGCUCg-GUUUCUGGaACA--------AGU-GCAGG- -5'
29561 3' -49.6 NC_006151.1 + 3184 0.66 0.997049
Target:  5'- aGCGGGUCGuaGAGcACCaccacGcgCACGUCCu -3'
miRNA:   3'- -CGCUCGGU--UUC-UGGaa---CaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 96447 0.66 0.996515
Target:  5'- gGCGAGCCAGGcGuCCagGUccgccUCGCGgcUCCg -3'
miRNA:   3'- -CGCUCGGUUU-CuGGaaCA-----AGUGC--AGG- -5'
29561 3' -49.6 NC_006151.1 + 127809 0.66 0.996515
Target:  5'- cGgGGGCgCGAGGuCCUugcgGUUCACGUa- -3'
miRNA:   3'- -CgCUCG-GUUUCuGGAa---CAAGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 63426 0.66 0.996458
Target:  5'- gGCGGGCgGcacgucgcacagcGAGGCCagGUcgaGCGUCCg -3'
miRNA:   3'- -CGCUCGgU-------------UUCUGGaaCAag-UGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.