miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 138634 0.66 0.651056
Target:  5'- cGGGGGCGCGCCGgacugggaGGCcuucaACGC-CAcGGc -3'
miRNA:   3'- -CCCCUGCGCGGCg-------UCG-----UGCGaGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 138499 0.66 0.651056
Target:  5'- cGGcGGGCGC-CCGCuGCACcuccucgucCUCGGGg -3'
miRNA:   3'- -CC-CCUGCGcGGCGuCGUGc--------GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 85163 0.66 0.651056
Target:  5'- aGGGGGCcgGCGCCGCgGGCGcCGCcgccccgCuGGg -3'
miRNA:   3'- -CCCCUG--CGCGGCG-UCGU-GCGa------GuCCa -5'
29561 5' -62.1 NC_006151.1 + 22328 0.66 0.64514
Target:  5'- cGGGcGACcaGCGCCGCcaauAGCgcugcgagcagcaugGCGCUggCAGGUg -3'
miRNA:   3'- -CCC-CUG--CGCGGCG----UCG---------------UGCGA--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 78392 0.66 0.641193
Target:  5'- aGGGGGCG-GCCaCGGCgGCuCUCGGGc -3'
miRNA:   3'- -CCCCUGCgCGGcGUCG-UGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 141855 0.66 0.641193
Target:  5'- aGGGGcuCGCGCCGC-GC-C-CUCuGGUg -3'
miRNA:   3'- -CCCCu-GCGCGGCGuCGuGcGAGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 95331 0.66 0.641193
Target:  5'- --cGAagGCGCCGCccgccaGGCACGCgggCAGGUu -3'
miRNA:   3'- cccCUg-CGCGGCG------UCGUGCGa--GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 103650 0.66 0.641193
Target:  5'- uGGcGGACGCGgaCacggcggagaagGCGGCGCGCgcggCGGGg -3'
miRNA:   3'- -CC-CCUGCGCg-G------------CGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 111413 0.66 0.641193
Target:  5'- cGGGGcgggagaccgaGCGCuGCCGCaucucGGCGCGgUcCAGGa -3'
miRNA:   3'- -CCCC-----------UGCG-CGGCG-----UCGUGCgA-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 134829 0.66 0.641193
Target:  5'- -cGGugGCGaCCGC-GCGCGCacacacgCGGGg -3'
miRNA:   3'- ccCCugCGC-GGCGuCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 131519 0.66 0.640206
Target:  5'- gGGGGAacggcuggaaGCGCUGCucuugcgAGCGC-CUCGGGc -3'
miRNA:   3'- -CCCCUg---------CGCGGCG-------UCGUGcGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 135010 0.66 0.640206
Target:  5'- cGGGGGCGCGgggggGCAGCAgCGgggccgcgucgucCUCGGGg -3'
miRNA:   3'- -CCCCUGCGCgg---CGUCGU-GC-------------GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 28842 0.66 0.638233
Target:  5'- cGGGGACGCGggcCCGgcucccccauuggcCGGCGCGUccccggaggCGGGUg -3'
miRNA:   3'- -CCCCUGCGC---GGC--------------GUCGUGCGa--------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 55472 0.66 0.635272
Target:  5'- nGGGGcGCGCGCC-CGGCGCcgcggacggccagccGCcgCGGGa -3'
miRNA:   3'- -CCCC-UGCGCGGcGUCGUG---------------CGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 53483 0.66 0.631324
Target:  5'- cGGcaGCGaGCCGUGGCACGCgaaggcCAGGUg -3'
miRNA:   3'- -CCccUGCgCGGCGUCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 81582 0.66 0.631324
Target:  5'- aGGGucucgcGCGCGUCGCcggggccgccGGCGCGCagcagCAGGg -3'
miRNA:   3'- cCCC------UGCGCGGCG----------UCGUGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 88448 0.66 0.631324
Target:  5'- cGGaGACGCGCgUGCGGCGCccgaGCUCGucggccacGGUg -3'
miRNA:   3'- cCC-CUGCGCG-GCGUCGUG----CGAGU--------CCA- -5'
29561 5' -62.1 NC_006151.1 + 93572 0.66 0.631324
Target:  5'- cGGGGGCGgGCgCGCcaaagAGCGgGCUCGc-- -3'
miRNA:   3'- -CCCCUGCgCG-GCG-----UCGUgCGAGUcca -5'
29561 5' -62.1 NC_006151.1 + 57049 0.66 0.630337
Target:  5'- gGGGGGCGCaGCUGCucguagggcaccgGGCcgGCGCcgcgCAGGc -3'
miRNA:   3'- -CCCCUGCG-CGGCG-------------UCG--UGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 64636 0.66 0.621455
Target:  5'- cGGGGCGCGgCGCccCGCGCaggaaccgCAGGa -3'
miRNA:   3'- cCCCUGCGCgGCGucGUGCGa-------GUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.