miRNA display CGI


Results 1 - 20 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29562 5' -66.4 NC_006151.1 + 11900 0.65 0.491704
Target:  5'- uCGAG-GCGCGUcgggguuuucgcgcCCUCGcGCCGCCGccGCc -3'
miRNA:   3'- cGCUCgCGCGCA--------------GGGGC-CGGCGGC--CG- -5'
29562 5' -66.4 NC_006151.1 + 137396 0.65 0.491704
Target:  5'- -aGAGCGCcugcccgccgggggGCG-CCCUcGCCGCCGccGCg -3'
miRNA:   3'- cgCUCGCG--------------CGCaGGGGcCGGCGGC--CG- -5'
29562 5' -66.4 NC_006151.1 + 86805 0.66 0.485515
Target:  5'- aGCGGG-GC-C-UCCCCGGCgC-CCGGCc -3'
miRNA:   3'- -CGCUCgCGcGcAGGGGCCG-GcGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 13115 0.66 0.485515
Target:  5'- gGCGGGUcacGCGCGcucccgcgacUUCCCGGCCcGCgaugCGGUc -3'
miRNA:   3'- -CGCUCG---CGCGC----------AGGGGCCGG-CG----GCCG- -5'
29562 5' -66.4 NC_006151.1 + 69880 0.66 0.485515
Target:  5'- aGCucGCGCGCG-CCCacgcgcaGcGCCGCCGuCg -3'
miRNA:   3'- -CGcuCGCGCGCaGGGg------C-CGGCGGCcG- -5'
29562 5' -66.4 NC_006151.1 + 72295 0.66 0.485515
Target:  5'- gGCGucacGCGCGUGaugacggCCgCGaagcGCCGCCGGUc -3'
miRNA:   3'- -CGCu---CGCGCGCa------GGgGC----CGGCGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 98306 0.66 0.485515
Target:  5'- gGUGcAGuCGCGCaUCCUggaguucuucaUGGCCGCgGGCc -3'
miRNA:   3'- -CGC-UC-GCGCGcAGGG-----------GCCGGCGgCCG- -5'
29562 5' -66.4 NC_006151.1 + 123886 0.66 0.485515
Target:  5'- gGCGcuCGcCGCGgCCCC-GCCGUgCGGCg -3'
miRNA:   3'- -CGCucGC-GCGCaGGGGcCGGCG-GCCG- -5'
29562 5' -66.4 NC_006151.1 + 2653 0.66 0.485515
Target:  5'- cGUGuAGCGCaCGUugUCCUGGCgGCagaGGCg -3'
miRNA:   3'- -CGC-UCGCGcGCA--GGGGCCGgCGg--CCG- -5'
29562 5' -66.4 NC_006151.1 + 18834 0.66 0.485515
Target:  5'- aCGAGCGUGUaGUCCCaGGUgGCgacgUGGCc -3'
miRNA:   3'- cGCUCGCGCG-CAGGGgCCGgCG----GCCG- -5'
29562 5' -66.4 NC_006151.1 + 20750 0.66 0.485515
Target:  5'- aGCcGGCGCGCcUCCaCCGcggcggacGCgCGCCGGg -3'
miRNA:   3'- -CGcUCGCGCGcAGG-GGC--------CG-GCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 21412 0.66 0.485515
Target:  5'- gGCG-GUGCgGCGUCUCgGGCC-UCGGg -3'
miRNA:   3'- -CGCuCGCG-CGCAGGGgCCGGcGGCCg -5'
29562 5' -66.4 NC_006151.1 + 118168 0.66 0.485515
Target:  5'- cGCuGGUGCGCGgCCugaccgucgaggCCGGCuuCGCCGGg -3'
miRNA:   3'- -CGcUCGCGCGCaGG------------GGCCG--GCGGCCg -5'
29562 5' -66.4 NC_006151.1 + 11357 0.66 0.485515
Target:  5'- cGCGGGCGCuaccGCGcgCUCCGcucGCCGCCu-- -3'
miRNA:   3'- -CGCUCGCG----CGCa-GGGGC---CGGCGGccg -5'
29562 5' -66.4 NC_006151.1 + 82297 0.66 0.485515
Target:  5'- cGCGGGgcaGCGCGcCUCCGcGuCCGCgaggaCGGCc -3'
miRNA:   3'- -CGCUCg--CGCGCaGGGGC-C-GGCG-----GCCG- -5'
29562 5' -66.4 NC_006151.1 + 89633 0.66 0.484634
Target:  5'- aGCGuGUGCGCGcCCUugaCGGCCaCCgagagguGGCg -3'
miRNA:   3'- -CGCuCGCGCGCaGGG---GCCGGcGG-------CCG- -5'
29562 5' -66.4 NC_006151.1 + 93592 0.66 0.484634
Target:  5'- aGCGGGCuCGCG-CCgaUGGCCugcagcaGCCGGUc -3'
miRNA:   3'- -CGCUCGcGCGCaGGg-GCCGG-------CGGCCG- -5'
29562 5' -66.4 NC_006151.1 + 65337 0.66 0.484634
Target:  5'- aCGAGCGCGCGgccgagCUCGGUgaagacgCGCCccagGGCg -3'
miRNA:   3'- cGCUCGCGCGCag----GGGCCG-------GCGG----CCG- -5'
29562 5' -66.4 NC_006151.1 + 139802 0.66 0.480241
Target:  5'- -aGAGCGCGCGcgCCgCCGucuCCGCgacgcacgcgcggguCGGCg -3'
miRNA:   3'- cgCUCGCGCGCa-GG-GGCc--GGCG---------------GCCG- -5'
29562 5' -66.4 NC_006151.1 + 89566 0.66 0.47674
Target:  5'- cGCGAGgcugaUGgGCacgCCCaugGGCuCGCCGGCg -3'
miRNA:   3'- -CGCUC-----GCgCGca-GGGg--CCG-GCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.