miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 93704 0.66 0.76322
Target:  5'- aCUCGCACUCgaUCUCcaCCGCCUCGgCAa- -3'
miRNA:   3'- -GGGUGUGAG--AGAG--GGCGGGGUgGUgu -5'
29567 3' -59.9 NC_006151.1 + 9022 0.66 0.76322
Target:  5'- cCCCGgACcCcCUCCCG-CCCGCCGgGg -3'
miRNA:   3'- -GGGUgUGaGaGAGGGCgGGGUGGUgU- -5'
29567 3' -59.9 NC_006151.1 + 7654 0.66 0.76322
Target:  5'- cCUCGCGCUCggcgcgcgCUCCgagggCGCCCCAgCCGg- -3'
miRNA:   3'- -GGGUGUGAGa-------GAGG-----GCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 130325 0.66 0.76322
Target:  5'- gCCgCGCGCUCggggagCUCgCGCgCCGCgGCGu -3'
miRNA:   3'- -GG-GUGUGAGa-----GAGgGCGgGGUGgUGU- -5'
29567 3' -59.9 NC_006151.1 + 31808 0.66 0.76322
Target:  5'- gCCGCGuccuccucCUC-CUCCCuCCCCGCCGg- -3'
miRNA:   3'- gGGUGU--------GAGaGAGGGcGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 65901 0.66 0.75766
Target:  5'- gUCCGC-CUcCUCcCCCucguccucgucgggcGCCCCGCCGCc -3'
miRNA:   3'- -GGGUGuGA-GAGaGGG---------------CGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 13470 0.66 0.753932
Target:  5'- uCCCGCGggC-CggaCCGCCCCGCCGa- -3'
miRNA:   3'- -GGGUGUgaGaGag-GGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 80351 0.66 0.753932
Target:  5'- --gGCgGCUCUCcgCCCGUCUCACaCACAa -3'
miRNA:   3'- gggUG-UGAGAGa-GGGCGGGGUG-GUGU- -5'
29567 3' -59.9 NC_006151.1 + 49130 0.66 0.753932
Target:  5'- aCCCgACGCUg---CCCGCgCCCGcCCACGg -3'
miRNA:   3'- -GGG-UGUGAgagaGGGCG-GGGU-GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 48773 0.66 0.744543
Target:  5'- gCCgACGC-CUCcgcCCCGCCCC-CCGa- -3'
miRNA:   3'- -GGgUGUGaGAGa--GGGCGGGGuGGUgu -5'
29567 3' -59.9 NC_006151.1 + 7074 0.66 0.744543
Target:  5'- uCCCGCGCgcCUCUgauuugcaugCCCGgCCCGCUcuGCGg -3'
miRNA:   3'- -GGGUGUGa-GAGA----------GGGCgGGGUGG--UGU- -5'
29567 3' -59.9 NC_006151.1 + 17762 0.66 0.743599
Target:  5'- gCCCACaaccacguggcucGCUCUCcuccgCCCGCUUCGCCc-- -3'
miRNA:   3'- -GGGUG-------------UGAGAGa----GGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 33765 0.66 0.73506
Target:  5'- aCgACACcCUCcccgCCCGCCCCGuCCGa- -3'
miRNA:   3'- gGgUGUGaGAGa---GGGCGGGGU-GGUgu -5'
29567 3' -59.9 NC_006151.1 + 35778 0.66 0.73506
Target:  5'- aCCCAC-CgaggCUCUCGgCCCGCCAgAg -3'
miRNA:   3'- -GGGUGuGaga-GAGGGCgGGGUGGUgU- -5'
29567 3' -59.9 NC_006151.1 + 48589 0.66 0.73506
Target:  5'- gCCCgggguGCGC-CUCgucgugCCUGCCgCCGCCGCc -3'
miRNA:   3'- -GGG-----UGUGaGAGa-----GGGCGG-GGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 68416 0.66 0.73506
Target:  5'- gCCCGCcC-C-C-CUCGCCCCGCUACAc -3'
miRNA:   3'- -GGGUGuGaGaGaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 68635 0.66 0.73506
Target:  5'- gCCCGCGCgUCg--CCgGCUCCACUGCc -3'
miRNA:   3'- -GGGUGUG-AGagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 141839 0.66 0.73506
Target:  5'- uCCCGCGCUCgacgcgaggggCUCgCGCCgCGCCc-- -3'
miRNA:   3'- -GGGUGUGAGa----------GAGgGCGGgGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 87684 0.66 0.725493
Target:  5'- gCCC-CGCUCccuUCccgCCCGCCCCgacgACCAa- -3'
miRNA:   3'- -GGGuGUGAG---AGa--GGGCGGGG----UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 33976 0.66 0.725493
Target:  5'- gCCCgcgcggggACACUCUUUCCCccggaggggcGUCCCGgCGCGc -3'
miRNA:   3'- -GGG--------UGUGAGAGAGGG----------CGGGGUgGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.