miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 3' -59.9 NC_006151.1 + 109502 0.67 0.696368
Target:  5'- uUCACAC-CUC-CgCCGCUgCCGCCGCAg -3'
miRNA:   3'- gGGUGUGaGAGaG-GGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109424 0.71 0.472452
Target:  5'- gCCGCACcaccgCCgGCCCCACCACc -3'
miRNA:   3'- gGGUGUGagagaGGgCGGGGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 109367 0.79 0.160034
Target:  5'- gCCAcCAC-CUCUUCCGCCCCcGCCGCAc -3'
miRNA:   3'- gGGU-GUGaGAGAGGGCGGGG-UGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 109207 0.72 0.386054
Target:  5'- gCCgGC-CUCgccagagaCUCCCGCCCCGgCGCAg -3'
miRNA:   3'- -GGgUGuGAGa-------GAGGGCGGGGUgGUGU- -5'
29567 3' -59.9 NC_006151.1 + 108323 0.73 0.339468
Target:  5'- cCCCGCGCcCgggCCCGCCCCAUCGg- -3'
miRNA:   3'- -GGGUGUGaGagaGGGCGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 108264 0.73 0.370064
Target:  5'- aCUACGCUCcCcaggCCCGCCCCuCCACc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGGGuGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108210 0.71 0.445469
Target:  5'- aCUACGCUCcCcaggCCCGCCgCACCGCc -3'
miRNA:   3'- gGGUGUGAGaGa---GGGCGGgGUGGUGu -5'
29567 3' -59.9 NC_006151.1 + 108158 0.69 0.557779
Target:  5'- gCCGCgggguGCUCcC-CCCGCCCCGCC-CGc -3'
miRNA:   3'- gGGUG-----UGAGaGaGGGCGGGGUGGuGU- -5'
29567 3' -59.9 NC_006151.1 + 107574 0.68 0.627002
Target:  5'- gCCCGCggaGCUgaCUCCCgccgccaagcugGCCCCGCCGg- -3'
miRNA:   3'- -GGGUG---UGAgaGAGGG------------CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 107520 0.7 0.500236
Target:  5'- gCCCACGCUCcCgccguuggCCCcggcgGCCCCGCCGg- -3'
miRNA:   3'- -GGGUGUGAGaGa-------GGG-----CGGGGUGGUgu -5'
29567 3' -59.9 NC_006151.1 + 101869 0.75 0.2775
Target:  5'- -gCGCAC-CgCUCCCGCCgCCGCCGCGg -3'
miRNA:   3'- ggGUGUGaGaGAGGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 99734 0.69 0.557779
Target:  5'- gCgGCGCUCgUCgacCUCGCCgCCGCCGCGg -3'
miRNA:   3'- gGgUGUGAG-AGa--GGGCGG-GGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 93704 0.66 0.76322
Target:  5'- aCUCGCACUCgaUCUCcaCCGCCUCGgCAa- -3'
miRNA:   3'- -GGGUGUGAG--AGAG--GGCGGGGUgGUgu -5'
29567 3' -59.9 NC_006151.1 + 93321 0.74 0.310749
Target:  5'- cCCCAuccCACUCUCccauccccguUCCCGUCCCACCc-- -3'
miRNA:   3'- -GGGU---GUGAGAG----------AGGGCGGGGUGGugu -5'
29567 3' -59.9 NC_006151.1 + 93023 0.69 0.548036
Target:  5'- cCCCACcuuCUCUCUCCgucguCGCCUCccccCCGCGg -3'
miRNA:   3'- -GGGUGu--GAGAGAGG-----GCGGGGu---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 91794 0.72 0.410877
Target:  5'- gCCCggcuuauauGCGCgggaugC-CCCGCCCCGCCACAu -3'
miRNA:   3'- -GGG---------UGUGaga---GaGGGCGGGGUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 89922 0.67 0.666785
Target:  5'- cUCCACGCUgUagCCgCGCCCCAgguCCGCGg -3'
miRNA:   3'- -GGGUGUGAgAgaGG-GCGGGGU---GGUGU- -5'
29567 3' -59.9 NC_006151.1 + 88716 0.67 0.696368
Target:  5'- gCCCuCGgUCUCggcgUCCGCCgCgGCCACGc -3'
miRNA:   3'- -GGGuGUgAGAGa---GGGCGG-GgUGGUGU- -5'
29567 3' -59.9 NC_006151.1 + 87684 0.66 0.725493
Target:  5'- gCCC-CGCUCccuUCccgCCCGCCCCgacgACCAa- -3'
miRNA:   3'- -GGGuGUGAG---AGa--GGGCGGGG----UGGUgu -5'
29567 3' -59.9 NC_006151.1 + 86070 0.71 0.436667
Target:  5'- gCCCGCAgUCUCcgcgcgcgCgCCGCCgCCGCCAUg -3'
miRNA:   3'- -GGGUGUgAGAGa-------G-GGCGG-GGUGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.