miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 42325 0.66 0.951935
Target:  5'- cCCGCGCGAagcuGCGACGGgaGUGgaGCGGa -3'
miRNA:   3'- uGGUGUGCUc---UGCUGCCg-CACa-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 89114 0.66 0.951935
Target:  5'- cCUGCGCGAGACcgagGGCGGCGggacCGGg -3'
miRNA:   3'- uGGUGUGCUCUG----CUGCCGCacauGUC- -5'
29567 5' -54.6 NC_006151.1 + 59280 0.66 0.951935
Target:  5'- cACCuugaACACGAG-CG-CGGCGUGgcgcccGCGGc -3'
miRNA:   3'- -UGG----UGUGCUCuGCuGCCGCACa-----UGUC- -5'
29567 5' -54.6 NC_006151.1 + 124811 0.66 0.951526
Target:  5'- cGCCGCACuucacgguggccuGGGACugggcccccaaGACGcggcGCGUGUGCAGc -3'
miRNA:   3'- -UGGUGUG-------------CUCUG-----------CUGC----CGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 62587 0.66 0.947737
Target:  5'- gGCgACgACGAguuuGACGACGGCGacgaggucgUGUACGa -3'
miRNA:   3'- -UGgUG-UGCU----CUGCUGCCGC---------ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 127132 0.66 0.947737
Target:  5'- gACCACgAUGAcACGcACGccGUGUGUACAGa -3'
miRNA:   3'- -UGGUG-UGCUcUGC-UGC--CGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 104808 0.66 0.947737
Target:  5'- cGCCGCGaccuGGCGGCGGCGcGcgACGGc -3'
miRNA:   3'- -UGGUGUgcu-CUGCUGCCGCaCa-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 100466 0.66 0.947737
Target:  5'- cGCUGCGCGAGuGCGA-GGCGcUGggccUGCAGg -3'
miRNA:   3'- -UGGUGUGCUC-UGCUgCCGC-AC----AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 25332 0.66 0.947737
Target:  5'- -gCGC-CGGGACGGcCGGCGUGccGCGa -3'
miRNA:   3'- ugGUGuGCUCUGCU-GCCGCACa-UGUc -5'
29567 5' -54.6 NC_006151.1 + 92517 0.66 0.947305
Target:  5'- uGCCACACGgaccugcaccGGGCGcCGGaCGUggacucgGUGCAGc -3'
miRNA:   3'- -UGGUGUGC----------UCUGCuGCC-GCA-------CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 116762 0.66 0.943304
Target:  5'- aGCC-CGCGAGAagaGCaGCGUGUGCu- -3'
miRNA:   3'- -UGGuGUGCUCUgc-UGcCGCACAUGuc -5'
29567 5' -54.6 NC_006151.1 + 81943 0.66 0.943304
Target:  5'- gGCCACGcCGAGGCGcaccgccgcGCGGUaaaaGUaGUACGGc -3'
miRNA:   3'- -UGGUGU-GCUCUGC---------UGCCG----CA-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 104890 0.66 0.943304
Target:  5'- uGCUGCGCGAGgugguggacGCGGCGGCG-GcGCGc -3'
miRNA:   3'- -UGGUGUGCUC---------UGCUGCCGCaCaUGUc -5'
29567 5' -54.6 NC_006151.1 + 64627 0.66 0.943304
Target:  5'- cGCCGgcCGCGGGGCG-CGGCGccccGcGCAGg -3'
miRNA:   3'- -UGGU--GUGCUCUGCuGCCGCa---CaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 66921 0.66 0.938633
Target:  5'- gGCCACGaugGAGGCGGgGGCGaggGCAa -3'
miRNA:   3'- -UGGUGUg--CUCUGCUgCCGCacaUGUc -5'
29567 5' -54.6 NC_006151.1 + 18981 0.66 0.938633
Target:  5'- gGCUGCACGAGGCGuacgcGCGGCGcGccacCAGc -3'
miRNA:   3'- -UGGUGUGCUCUGC-----UGCCGCaCau--GUC- -5'
29567 5' -54.6 NC_006151.1 + 128147 0.66 0.933721
Target:  5'- cGCCGUACGAGgccaggcugcgcGCGAUGGCGUaGUugAa -3'
miRNA:   3'- -UGGUGUGCUC------------UGCUGCCGCA-CAugUc -5'
29567 5' -54.6 NC_006151.1 + 90716 0.66 0.933721
Target:  5'- cGCCcCGC-AGGCGGCGGCGacgGUgGCGGc -3'
miRNA:   3'- -UGGuGUGcUCUGCUGCCGCa--CA-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 5442 0.66 0.933721
Target:  5'- gGCCGCggGCGAcggucucgacGGCGACGGUGgugGUGgAGu -3'
miRNA:   3'- -UGGUG--UGCU----------CUGCUGCCGCa--CAUgUC- -5'
29567 5' -54.6 NC_006151.1 + 55864 0.66 0.933721
Target:  5'- uACCugAcCGAGAUcGCGGCGcUGUcGCGGc -3'
miRNA:   3'- -UGGugU-GCUCUGcUGCCGC-ACA-UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.