miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29574 5' -60.8 NC_006151.1 + 73985 0.66 0.673446
Target:  5'- aUGCCCGCgUCCGgcgccaccgaggccAGGAGGGGcGUCg-- -3'
miRNA:   3'- aAUGGGCG-GGGC--------------UCCUUCCC-CAGaga -5'
29574 5' -60.8 NC_006151.1 + 30682 0.66 0.66646
Target:  5'- -aGCCUcCCCCGGcGGGcggGGGGGUgUCg -3'
miRNA:   3'- aaUGGGcGGGGCU-CCU---UCCCCAgAGa -5'
29574 5' -60.8 NC_006151.1 + 39050 0.66 0.656458
Target:  5'- aUAgCCGaCCCCGAGGAcgugcgcguGGuGGUgCUCUa -3'
miRNA:   3'- aAUgGGC-GGGGCUCCUu--------CC-CCA-GAGA- -5'
29574 5' -60.8 NC_006151.1 + 8970 0.66 0.656458
Target:  5'- -cGCgCGCCCCG-GGAA-GGGUCg-- -3'
miRNA:   3'- aaUGgGCGGGGCuCCUUcCCCAGaga -5'
29574 5' -60.8 NC_006151.1 + 38915 0.67 0.616343
Target:  5'- -gGCCCGCgCCuCGuGGAccAGGaGGUCUUc -3'
miRNA:   3'- aaUGGGCG-GG-GCuCCU--UCC-CCAGAGa -5'
29574 5' -60.8 NC_006151.1 + 2190 0.67 0.596324
Target:  5'- -cGCCCGaggcCCCCGcGGGccGGuGGGUCUCc -3'
miRNA:   3'- aaUGGGC----GGGGCuCCU--UC-CCCAGAGa -5'
29574 5' -60.8 NC_006151.1 + 12998 0.67 0.595325
Target:  5'- -cACCCGUCCCGGGGGAuucccugucccucGGGG-Cg-- -3'
miRNA:   3'- aaUGGGCGGGGCUCCUU-------------CCCCaGaga -5'
29574 5' -60.8 NC_006151.1 + 140391 0.68 0.566501
Target:  5'- cUGCgUGCugCCCGAGGAccuGGGGGaCUCg -3'
miRNA:   3'- aAUGgGCG--GGGCUCCU---UCCCCaGAGa -5'
29574 5' -60.8 NC_006151.1 + 29243 0.68 0.566501
Target:  5'- -gGCCgCGCCCCGAGGGacAGGGaa-UCc -3'
miRNA:   3'- aaUGG-GCGGGGCUCCU--UCCCcagAGa -5'
29574 5' -60.8 NC_006151.1 + 41541 0.68 0.563538
Target:  5'- --cCCCGCCCgCGGacccccggugcgacGGAAGGGGcaggCUCg -3'
miRNA:   3'- aauGGGCGGG-GCU--------------CCUUCCCCa---GAGa -5'
29574 5' -60.8 NC_006151.1 + 20469 0.68 0.54683
Target:  5'- -cGCCgGucCCCCGGGGGggcgcGGGGGUCgUCg -3'
miRNA:   3'- aaUGGgC--GGGGCUCCU-----UCCCCAG-AGa -5'
29574 5' -60.8 NC_006151.1 + 33229 0.68 0.54683
Target:  5'- ----gCGCCCCGgcgggcGGGAGGGGGUC-Cg -3'
miRNA:   3'- aauggGCGGGGC------UCCUUCCCCAGaGa -5'
29574 5' -60.8 NC_006151.1 + 15021 0.68 0.527381
Target:  5'- -cGCCCGaCCCCGAGGAGGuGcGcGUC-Ca -3'
miRNA:   3'- aaUGGGC-GGGGCUCCUUC-C-C-CAGaGa -5'
29574 5' -60.8 NC_006151.1 + 13387 0.68 0.526415
Target:  5'- -cACCCGCCuCCGGGGAcgcgccggccaauGGGGGa---- -3'
miRNA:   3'- aaUGGGCGG-GGCUCCU-------------UCCCCagaga -5'
29574 5' -60.8 NC_006151.1 + 29186 0.68 0.517753
Target:  5'- -cGCCCGCuCUCGAGGAaaaAGGGG-Cg-- -3'
miRNA:   3'- aaUGGGCG-GGGCUCCU---UCCCCaGaga -5'
29574 5' -60.8 NC_006151.1 + 27630 0.68 0.517753
Target:  5'- -cGgCCGCCCCGAcGGGuGGGGGUggCUg -3'
miRNA:   3'- aaUgGGCGGGGCU-CCU-UCCCCAgaGA- -5'
29574 5' -60.8 NC_006151.1 + 34028 0.7 0.456184
Target:  5'- -gGCCCuCCCCGccGGGAAGGGGacccggcccucuucgUCUCc -3'
miRNA:   3'- aaUGGGcGGGGC--UCCUUCCCC---------------AGAGa -5'
29574 5' -60.8 NC_006151.1 + 34123 0.7 0.44363
Target:  5'- -cACCCGCCCCcccaccGGgcGGGGUC-Cg -3'
miRNA:   3'- aaUGGGCGGGGcu----CCuuCCCCAGaGa -5'
29574 5' -60.8 NC_006151.1 + 141432 0.7 0.442741
Target:  5'- -gGCCCGgcgcgaacgacguCCCCGuAGGAGGGcGGUCUg- -3'
miRNA:   3'- aaUGGGC-------------GGGGC-UCCUUCC-CCAGAga -5'
29574 5' -60.8 NC_006151.1 + 27292 0.7 0.434783
Target:  5'- -cGCCCGCgCuuGGGGGgcguGGGGGUCg-- -3'
miRNA:   3'- aaUGGGCG-GggCUCCU----UCCCCAGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.