miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 3' -55.4 NC_006151.1 + 68941 0.66 0.928569
Target:  5'- -gAUCuggCGCAUGCgCgGCUCGCggcgCACg -3'
miRNA:   3'- ggUAGca-GUGUACG-GgCGAGCGa---GUG- -5'
29575 3' -55.4 NC_006151.1 + 135286 0.66 0.917538
Target:  5'- -gGUCGUC-CGUGUCCGCgUCGacggCGCc -3'
miRNA:   3'- ggUAGCAGuGUACGGGCG-AGCga--GUG- -5'
29575 3' -55.4 NC_006151.1 + 125575 0.66 0.917538
Target:  5'- uCCAUg--CGCGUGCCCGgCgagCGCggCACg -3'
miRNA:   3'- -GGUAgcaGUGUACGGGC-Ga--GCGa-GUG- -5'
29575 3' -55.4 NC_006151.1 + 86954 0.66 0.914041
Target:  5'- gCCAUCGUCuCGgccGCcauggaccgccgccaCCGC-CGCUCGCc -3'
miRNA:   3'- -GGUAGCAGuGUa--CG---------------GGCGaGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 119081 0.66 0.911662
Target:  5'- cCCGUC-UCGCA-GgCCGCggCGCUCGg -3'
miRNA:   3'- -GGUAGcAGUGUaCgGGCGa-GCGAGUg -5'
29575 3' -55.4 NC_006151.1 + 137249 0.66 0.911662
Target:  5'- aCGUCGacuuUCGCcucgcgcgcccgGUGCCCGCgggcaCGCUCGa -3'
miRNA:   3'- gGUAGC----AGUG------------UACGGGCGa----GCGAGUg -5'
29575 3' -55.4 NC_006151.1 + 63874 0.66 0.905546
Target:  5'- aCCcgCGcaGCGUGUCCGCgucggggCGCUCGa -3'
miRNA:   3'- -GGuaGCagUGUACGGGCGa------GCGAGUg -5'
29575 3' -55.4 NC_006151.1 + 51628 0.66 0.905546
Target:  5'- gCCGUCG-CGCAgcgcgGCCaauauauGCUCGCUgAUg -3'
miRNA:   3'- -GGUAGCaGUGUa----CGGg------CGAGCGAgUG- -5'
29575 3' -55.4 NC_006151.1 + 49385 0.66 0.905546
Target:  5'- gCCAUcCGUCGCcgcugGCCCGCaCGCccuUCAg -3'
miRNA:   3'- -GGUA-GCAGUGua---CGGGCGaGCG---AGUg -5'
29575 3' -55.4 NC_006151.1 + 131552 0.66 0.899193
Target:  5'- gCC-UCGggcgccgCACggGcCCCGCgUCGCUCAUg -3'
miRNA:   3'- -GGuAGCa------GUGuaC-GGGCG-AGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 93037 0.67 0.892606
Target:  5'- uCCGUCGUCGCcuccccCCCGCggGC-CACu -3'
miRNA:   3'- -GGUAGCAGUGuac---GGGCGagCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 135404 0.67 0.885787
Target:  5'- gCCGUCGUCGCcggagGCCuCGUggCGCgccaggCACu -3'
miRNA:   3'- -GGUAGCAGUGua---CGG-GCGa-GCGa-----GUG- -5'
29575 3' -55.4 NC_006151.1 + 130668 0.67 0.885787
Target:  5'- ---aCGUCA-GUGCCCGCggggCGCggCGCa -3'
miRNA:   3'- gguaGCAGUgUACGGGCGa---GCGa-GUG- -5'
29575 3' -55.4 NC_006151.1 + 54804 0.67 0.878742
Target:  5'- cCCGgcacCGgCGCGUGCUgGCgcgcgacgCGCUCACg -3'
miRNA:   3'- -GGUa---GCaGUGUACGGgCGa-------GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 43068 0.67 0.871475
Target:  5'- aCCAUCGccaccgcCGCGUGUCCGCucccccccgugUCGCgCGCu -3'
miRNA:   3'- -GGUAGCa------GUGUACGGGCG-----------AGCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 77414 0.67 0.871475
Target:  5'- gCAUCGUgucCGUGCaCCGg-CGCUCGCg -3'
miRNA:   3'- gGUAGCAgu-GUACG-GGCgaGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 110906 0.67 0.863991
Target:  5'- -uGUCGUgCGCGUG-CCGCagGUUCACg -3'
miRNA:   3'- ggUAGCA-GUGUACgGGCGagCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 112213 0.67 0.863991
Target:  5'- cCCGUgGgCGCA-GUCgCGCUCGCUCGu -3'
miRNA:   3'- -GGUAgCaGUGUaCGG-GCGAGCGAGUg -5'
29575 3' -55.4 NC_006151.1 + 95047 0.68 0.856296
Target:  5'- gCCGUCGaaggggCGCAgGCCgCGCUCGCagaGCu -3'
miRNA:   3'- -GGUAGCa-----GUGUaCGG-GCGAGCGag-UG- -5'
29575 3' -55.4 NC_006151.1 + 128107 0.68 0.848396
Target:  5'- cCCGUCGUCGCcagcacGCgCGCgaagCGCUC-Cg -3'
miRNA:   3'- -GGUAGCAGUGua----CGgGCGa---GCGAGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.