miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 120958 0.66 0.664804
Target:  5'- aCCGCGucuuCCaGGCGGgGAacUGGagcgggcucaacGGCGGCa -3'
miRNA:   3'- -GGCGCu---GG-CCGCUgCU--ACC------------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 2605 0.66 0.664804
Target:  5'- gCGCGG-CGGCaGCGGgaccGGGGUccggGGCCc -3'
miRNA:   3'- gGCGCUgGCCGcUGCUa---CCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 92669 0.66 0.664804
Target:  5'- cCUGCuGCCGGCGGCc--GGGGaCGcGCg -3'
miRNA:   3'- -GGCGcUGGCCGCUGcuaCCCC-GC-CGg -5'
29575 5' -62.9 NC_006151.1 + 100095 0.66 0.664804
Target:  5'- gCCgGCG-CCGGCGcCGcccucgcuGGCGGCCa -3'
miRNA:   3'- -GG-CGCuGGCCGCuGCuacc----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 103675 0.66 0.664804
Target:  5'- -gGCGGCgCGcGCGGCGG-GGGugcuGCGcGCCg -3'
miRNA:   3'- ggCGCUG-GC-CGCUGCUaCCC----CGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 117298 0.66 0.664804
Target:  5'- gCGCGAgcugcUCGGCGcucgccACGccGaGGGCGGCg -3'
miRNA:   3'- gGCGCU-----GGCCGC------UGCuaC-CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 136631 0.66 0.664804
Target:  5'- aCG-GACCccGCGGCGcccGUGGGGCGcucGCCc -3'
miRNA:   3'- gGCgCUGGc-CGCUGC---UACCCCGC---CGG- -5'
29575 5' -62.9 NC_006151.1 + 15444 0.66 0.663847
Target:  5'- uCCGCGGCuCGGUgugcgagGACGAcGGGGaGGaCg -3'
miRNA:   3'- -GGCGCUG-GCCG-------CUGCUaCCCCgCCgG- -5'
29575 5' -62.9 NC_006151.1 + 37394 0.66 0.66289
Target:  5'- gCCGCGuccgcuaCGGCGGCGccGGGGacucccgcgaggGGCUc -3'
miRNA:   3'- -GGCGCug-----GCCGCUGCuaCCCCg-----------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 67731 0.66 0.661932
Target:  5'- gCGCGGCgcacaggcacggcgCGGCGGCcccgucgGGGuGCGGCg -3'
miRNA:   3'- gGCGCUG--------------GCCGCUGcua----CCC-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 84167 0.66 0.659059
Target:  5'- gCGCGACuCGGCGcgccuccucgccgccGCcGUGcccccGGGCGGCg -3'
miRNA:   3'- gGCGCUG-GCCGC---------------UGcUAC-----CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 54918 0.66 0.655224
Target:  5'- gCGCGuGCaCGGCGA-GGUGcuGGCGuGCCa -3'
miRNA:   3'- gGCGC-UG-GCCGCUgCUACc-CCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 85439 0.66 0.655224
Target:  5'- aCCGCG-CC-GCGGCcgccuuccUGGGccGCGGCCa -3'
miRNA:   3'- -GGCGCuGGcCGCUGcu------ACCC--CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 98482 0.66 0.655224
Target:  5'- gCCaCGACUGG-GACGA-GGGcaCGGCCc -3'
miRNA:   3'- -GGcGCUGGCCgCUGCUaCCCc-GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 131770 0.66 0.655224
Target:  5'- gUCGCGACC-GCGGCcgc-GGGCGccGCCg -3'
miRNA:   3'- -GGCGCUGGcCGCUGcuacCCCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 20812 0.66 0.655224
Target:  5'- gCCGCGgaagGCCucguGGUGcACGcgGGGGCagaGGUCg -3'
miRNA:   3'- -GGCGC----UGG----CCGC-UGCuaCCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 27520 0.66 0.655224
Target:  5'- gUGCGAUgggGGCGugGggGGGGgGGg- -3'
miRNA:   3'- gGCGCUGg--CCGCugCuaCCCCgCCgg -5'
29575 5' -62.9 NC_006151.1 + 28580 0.66 0.655224
Target:  5'- cCCGCauuGGCCGGCG-CGuccccGGaGGCGgguGCCg -3'
miRNA:   3'- -GGCG---CUGGCCGCuGCua---CC-CCGC---CGG- -5'
29575 5' -62.9 NC_006151.1 + 78519 0.66 0.655224
Target:  5'- cCCGCGAUC-GCGGaccCGGcgGGGGCcucGCCg -3'
miRNA:   3'- -GGCGCUGGcCGCU---GCUa-CCCCGc--CGG- -5'
29575 5' -62.9 NC_006151.1 + 104659 0.66 0.655224
Target:  5'- gCCGcCGACgCGGCgcgcgcgcucGACGAgGGGGUGcaccugcacguGCCg -3'
miRNA:   3'- -GGC-GCUG-GCCG----------CUGCUaCCCCGC-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.