Results 1 - 20 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 120958 | 0.66 | 0.664804 |
Target: 5'- aCCGCGucuuCCaGGCGGgGAacUGGagcgggcucaacGGCGGCa -3' miRNA: 3'- -GGCGCu---GG-CCGCUgCU--ACC------------CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 2605 | 0.66 | 0.664804 |
Target: 5'- gCGCGG-CGGCaGCGGgaccGGGGUccggGGCCc -3' miRNA: 3'- gGCGCUgGCCGcUGCUa---CCCCG----CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 92669 | 0.66 | 0.664804 |
Target: 5'- cCUGCuGCCGGCGGCc--GGGGaCGcGCg -3' miRNA: 3'- -GGCGcUGGCCGCUGcuaCCCC-GC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 100095 | 0.66 | 0.664804 |
Target: 5'- gCCgGCG-CCGGCGcCGcccucgcuGGCGGCCa -3' miRNA: 3'- -GG-CGCuGGCCGCuGCuacc----CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 103675 | 0.66 | 0.664804 |
Target: 5'- -gGCGGCgCGcGCGGCGG-GGGugcuGCGcGCCg -3' miRNA: 3'- ggCGCUG-GC-CGCUGCUaCCC----CGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 117298 | 0.66 | 0.664804 |
Target: 5'- gCGCGAgcugcUCGGCGcucgccACGccGaGGGCGGCg -3' miRNA: 3'- gGCGCU-----GGCCGC------UGCuaC-CCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 136631 | 0.66 | 0.664804 |
Target: 5'- aCG-GACCccGCGGCGcccGUGGGGCGcucGCCc -3' miRNA: 3'- gGCgCUGGc-CGCUGC---UACCCCGC---CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 15444 | 0.66 | 0.663847 |
Target: 5'- uCCGCGGCuCGGUgugcgagGACGAcGGGGaGGaCg -3' miRNA: 3'- -GGCGCUG-GCCG-------CUGCUaCCCCgCCgG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 37394 | 0.66 | 0.66289 |
Target: 5'- gCCGCGuccgcuaCGGCGGCGccGGGGacucccgcgaggGGCUc -3' miRNA: 3'- -GGCGCug-----GCCGCUGCuaCCCCg-----------CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 67731 | 0.66 | 0.661932 |
Target: 5'- gCGCGGCgcacaggcacggcgCGGCGGCcccgucgGGGuGCGGCg -3' miRNA: 3'- gGCGCUG--------------GCCGCUGcua----CCC-CGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 84167 | 0.66 | 0.659059 |
Target: 5'- gCGCGACuCGGCGcgccuccucgccgccGCcGUGcccccGGGCGGCg -3' miRNA: 3'- gGCGCUG-GCCGC---------------UGcUAC-----CCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 54918 | 0.66 | 0.655224 |
Target: 5'- gCGCGuGCaCGGCGA-GGUGcuGGCGuGCCa -3' miRNA: 3'- gGCGC-UG-GCCGCUgCUACc-CCGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 85439 | 0.66 | 0.655224 |
Target: 5'- aCCGCG-CC-GCGGCcgccuuccUGGGccGCGGCCa -3' miRNA: 3'- -GGCGCuGGcCGCUGcu------ACCC--CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 98482 | 0.66 | 0.655224 |
Target: 5'- gCCaCGACUGG-GACGA-GGGcaCGGCCc -3' miRNA: 3'- -GGcGCUGGCCgCUGCUaCCCc-GCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 131770 | 0.66 | 0.655224 |
Target: 5'- gUCGCGACC-GCGGCcgc-GGGCGccGCCg -3' miRNA: 3'- -GGCGCUGGcCGCUGcuacCCCGC--CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 20812 | 0.66 | 0.655224 |
Target: 5'- gCCGCGgaagGCCucguGGUGcACGcgGGGGCagaGGUCg -3' miRNA: 3'- -GGCGC----UGG----CCGC-UGCuaCCCCG---CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 27520 | 0.66 | 0.655224 |
Target: 5'- gUGCGAUgggGGCGugGggGGGGgGGg- -3' miRNA: 3'- gGCGCUGg--CCGCugCuaCCCCgCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 28580 | 0.66 | 0.655224 |
Target: 5'- cCCGCauuGGCCGGCG-CGuccccGGaGGCGgguGCCg -3' miRNA: 3'- -GGCG---CUGGCCGCuGCua---CC-CCGC---CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 78519 | 0.66 | 0.655224 |
Target: 5'- cCCGCGAUC-GCGGaccCGGcgGGGGCcucGCCg -3' miRNA: 3'- -GGCGCUGGcCGCU---GCUa-CCCCGc--CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 104659 | 0.66 | 0.655224 |
Target: 5'- gCCGcCGACgCGGCgcgcgcgcucGACGAgGGGGUGcaccugcacguGCCg -3' miRNA: 3'- -GGC-GCUG-GCCG----------CUGCUaCCCCGC-----------CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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