miRNA display CGI


Results 1 - 20 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 127248 0.66 0.716698
Target:  5'- -aGCUcuuGCGG-CGCGaCGCGCGGugGc -3'
miRNA:   3'- ugCGAc--CGCCuGUGC-GUGCGCCugCa -5'
29583 3' -60.9 NC_006151.1 + 78652 0.66 0.716698
Target:  5'- -aGCUGGUGGAgGCGgCcgggGCGCGGGUGc -3'
miRNA:   3'- ugCGACCGCCUgUGC-G----UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 105900 0.66 0.716698
Target:  5'- -aGCUGGCGGcCAUGCugugcaccgACGaGGGCGc -3'
miRNA:   3'- ugCGACCGCCuGUGCG---------UGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 40760 0.66 0.716698
Target:  5'- gAUGgaGGCGGcCAUcUugGCGGugGUc -3'
miRNA:   3'- -UGCgaCCGCCuGUGcGugCGCCugCA- -5'
29583 3' -60.9 NC_006151.1 + 71566 0.66 0.716698
Target:  5'- gGCGagggGGaCGGGCGgGCAuccucCGCGGGCGc -3'
miRNA:   3'- -UGCga--CC-GCCUGUgCGU-----GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 87359 0.66 0.716698
Target:  5'- gGC-CUGGCGGcccccguCGCGCACGUccccgcccaGGugGUc -3'
miRNA:   3'- -UGcGACCGCCu------GUGCGUGCG---------CCugCA- -5'
29583 3' -60.9 NC_006151.1 + 99075 0.66 0.716698
Target:  5'- uGCGCccgggcaccgUGGCGcGGCgccuGCGCACGgaccaGGGCGUg -3'
miRNA:   3'- -UGCG----------ACCGC-CUG----UGCGUGCg----CCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 100114 0.66 0.716698
Target:  5'- uCGCUGGCGGccaGCGCcuuccuCGgGGACc- -3'
miRNA:   3'- uGCGACCGCCug-UGCGu-----GCgCCUGca -5'
29583 3' -60.9 NC_006151.1 + 103540 0.66 0.716698
Target:  5'- cGCGCUGGUGGGCGC-CGgGCaGcCGc -3'
miRNA:   3'- -UGCGACCGCCUGUGcGUgCGcCuGCa -5'
29583 3' -60.9 NC_006151.1 + 106697 0.66 0.716698
Target:  5'- gGCGCcGGCGaccuguACGCGCcCGUGGGCa- -3'
miRNA:   3'- -UGCGaCCGCc-----UGUGCGuGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 133157 0.66 0.716698
Target:  5'- -gGC-GGCGG-CGCGgGCGUGGGCc- -3'
miRNA:   3'- ugCGaCCGCCuGUGCgUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 4028 0.66 0.716698
Target:  5'- gGCGUagguccaGGCGGccuCGCGgGCGCGGGCc- -3'
miRNA:   3'- -UGCGa------CCGCCu--GUGCgUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 39949 0.66 0.715735
Target:  5'- cCGCUGGUgcugaccccGGGCGCcgucgccGC-CGCGGGCGc -3'
miRNA:   3'- uGCGACCG---------CCUGUG-------CGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103494 0.66 0.715735
Target:  5'- gGCGcCUGGUGG-CGCGCuacCGCGagcugcuGACGUc -3'
miRNA:   3'- -UGC-GACCGCCuGUGCGu--GCGC-------CUGCA- -5'
29583 3' -60.9 NC_006151.1 + 89975 0.66 0.713805
Target:  5'- -gGCUGGCGacguaggugcacguGcCGCGCAggcUGCGGGCGa -3'
miRNA:   3'- ugCGACCGC--------------CuGUGCGU---GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 52155 0.66 0.710907
Target:  5'- gACGCUGuCcacgugcgucucgaaGGGCGCGCGCGCGaACGc -3'
miRNA:   3'- -UGCGACcG---------------CCUGUGCGUGCGCcUGCa -5'
29583 3' -60.9 NC_006151.1 + 99547 0.66 0.707033
Target:  5'- cACGgaGcacGUGGGCGCgGCGCGCGcGGCGc -3'
miRNA:   3'- -UGCgaC---CGCCUGUG-CGUGCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 50001 0.66 0.707033
Target:  5'- cGCGUUuGCGcGcCGCGCGCGCGGcccgcGCGg -3'
miRNA:   3'- -UGCGAcCGC-CuGUGCGUGCGCC-----UGCa -5'
29583 3' -60.9 NC_006151.1 + 26353 0.66 0.707033
Target:  5'- -gGCggcGGCGGGCcgcgucgggGCGCGCgucccccgGCGGGCGg -3'
miRNA:   3'- ugCGa--CCGCCUG---------UGCGUG--------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 92512 0.66 0.707033
Target:  5'- uGCGCUGccacaCGGACcUGCAC-CGGGCGc -3'
miRNA:   3'- -UGCGACc----GCCUGuGCGUGcGCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.