miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 62068 0.66 0.706161
Target:  5'- cGCGCCGucGUGACgaacgucguccUCGGCGCggucgGCcugggcGCGGc -3'
miRNA:   3'- -CGCGGU--CGCUG-----------AGCCGCGa----CGa-----CGCC- -5'
29590 3' -61.2 NC_006151.1 + 81273 0.66 0.706161
Target:  5'- aGCGCCucGGCGGggauCUCgGGCGCgGCgcgcGCGa -3'
miRNA:   3'- -CGCGG--UCGCU----GAG-CCGCGaCGa---CGCc -5'
29590 3' -61.2 NC_006151.1 + 104123 0.66 0.706161
Target:  5'- uGCGCCugcGCGACguggCGGCcgaccGCgGCUacgacgccGCGGa -3'
miRNA:   3'- -CGCGGu--CGCUGa---GCCG-----CGaCGA--------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 133141 0.66 0.706161
Target:  5'- uGUcCCAGaggGACUCGGCGgCgGC-GCGGg -3'
miRNA:   3'- -CGcGGUCg--CUGAGCCGC-GaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 34612 0.66 0.706161
Target:  5'- cGCGCCgAGCGcga-GGCGCgggugggGCgaccGCGGg -3'
miRNA:   3'- -CGCGG-UCGCugagCCGCGa------CGa---CGCC- -5'
29590 3' -61.2 NC_006151.1 + 72265 0.66 0.706161
Target:  5'- aCGCCgAGCGGCgUGGCcaGCaUGCggUGCGGc -3'
miRNA:   3'- cGCGG-UCGCUGaGCCG--CG-ACG--ACGCC- -5'
29590 3' -61.2 NC_006151.1 + 82993 0.66 0.706161
Target:  5'- uGCGCCGccaCGGCcgCGGCGCagacGC-GCGGc -3'
miRNA:   3'- -CGCGGUc--GCUGa-GCCGCGa---CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 115133 0.66 0.706161
Target:  5'- cGCGCguGCGcCUCGGCcaGCacGCgcccgaagGCGGc -3'
miRNA:   3'- -CGCGguCGCuGAGCCG--CGa-CGa-------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 121075 0.66 0.706161
Target:  5'- cGUGCUcGCaGACgggcggCGGCGCcggGCUGCa- -3'
miRNA:   3'- -CGCGGuCG-CUGa-----GCCGCGa--CGACGcc -5'
29590 3' -61.2 NC_006151.1 + 37411 0.66 0.706161
Target:  5'- gGCGCCGGgGACUCccgcgaGGgGCU-CUG-GGa -3'
miRNA:   3'- -CGCGGUCgCUGAG------CCgCGAcGACgCC- -5'
29590 3' -61.2 NC_006151.1 + 46607 0.66 0.705193
Target:  5'- gGCGCgAGCagagacgGACcCGGUGCcUGCgacGCGGc -3'
miRNA:   3'- -CGCGgUCG-------CUGaGCCGCG-ACGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 85811 0.66 0.703257
Target:  5'- aGCGCCAccagcucaaccgguGCGcCUggUGGCGCUggaGCUGCa- -3'
miRNA:   3'- -CGCGGU--------------CGCuGA--GCCGCGA---CGACGcc -5'
29590 3' -61.2 NC_006151.1 + 85082 0.66 0.700349
Target:  5'- gGCGCCuguacgugggcaaccGGCacuACUCGGCGCUcgagagcgccgcGCUGUGc -3'
miRNA:   3'- -CGCGG---------------UCGc--UGAGCCGCGA------------CGACGCc -5'
29590 3' -61.2 NC_006151.1 + 10623 0.66 0.697436
Target:  5'- cGCGCCcGCGugcGCUcgugcCGGCGCggcauccccgcccagGCgGCGGg -3'
miRNA:   3'- -CGCGGuCGC---UGA-----GCCGCGa--------------CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 2799 0.66 0.696464
Target:  5'- cGgGCCAGCG-CaCGGCGCacuggGCgGcCGGg -3'
miRNA:   3'- -CgCGGUCGCuGaGCCGCGa----CGaC-GCC- -5'
29590 3' -61.2 NC_006151.1 + 127988 0.66 0.696464
Target:  5'- cGUG-CGGCGGCUCcGCGUcGCggucGCGGg -3'
miRNA:   3'- -CGCgGUCGCUGAGcCGCGaCGa---CGCC- -5'
29590 3' -61.2 NC_006151.1 + 130296 0.66 0.696464
Target:  5'- cGCGCCGGcCGA--CGGCGC-GgaGCGc -3'
miRNA:   3'- -CGCGGUC-GCUgaGCCGCGaCgaCGCc -5'
29590 3' -61.2 NC_006151.1 + 137779 0.66 0.696464
Target:  5'- uGCuCCAGCaGGC-CGuGCuGCUGgaGCGGg -3'
miRNA:   3'- -CGcGGUCG-CUGaGC-CG-CGACgaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 67716 0.66 0.695491
Target:  5'- gGCGCCAcaggcacggcGCGGCgcacaggcaCGGCGCgGCggccccgucggggUGCGGc -3'
miRNA:   3'- -CGCGGU----------CGCUGa--------GCCGCGaCG-------------ACGCC- -5'
29590 3' -61.2 NC_006151.1 + 61873 0.66 0.690621
Target:  5'- cGCGUCuGCGcCUggacccuccaggccgUGGUGCUGCUGaUGGc -3'
miRNA:   3'- -CGCGGuCGCuGA---------------GCCGCGACGAC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.