miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 5' -54.2 NC_006151.1 + 100708 0.66 0.956291
Target:  5'- uGGaCCGAGGcGCGCgagGaGCAGgcGCCg -3'
miRNA:   3'- -CC-GGCUCCuCGUGaaaCgCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 49845 0.66 0.956291
Target:  5'- cGGCgGcGGGcccGCGCUggGCGCAGcACg -3'
miRNA:   3'- -CCGgCuCCU---CGUGAaaCGCGUCaUGg -5'
29590 5' -54.2 NC_006151.1 + 5232 0.66 0.956291
Target:  5'- aGGCCGAGcgccGCGCggcgGCgGCGGggGCCc -3'
miRNA:   3'- -CCGGCUCcu--CGUGaaa-CG-CGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 2009 0.66 0.955122
Target:  5'- gGGCCGAGGGGgcgcccCGCUcaGCGgAGcagcagguagggguUGCCg -3'
miRNA:   3'- -CCGGCUCCUC------GUGAaaCGCgUC--------------AUGG- -5'
29590 5' -54.2 NC_006151.1 + 73365 0.66 0.955122
Target:  5'- aGGuuGcccauguccgucacGGGGGCGCgcaGCGCGGccGCCg -3'
miRNA:   3'- -CCggC--------------UCCUCGUGaaaCGCGUCa-UGG- -5'
29590 5' -54.2 NC_006151.1 + 75245 0.66 0.955122
Target:  5'- cGCCGaAGGcGCACUgcaccuccgcgggcUccugGCGCAGcGCCg -3'
miRNA:   3'- cCGGC-UCCuCGUGA--------------Aa---CGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 121183 0.66 0.953933
Target:  5'- cGGCCGugcugcacgcgcucGGGGCGCgca-CGCAGcACCu -3'
miRNA:   3'- -CCGGCu-------------CCUCGUGaaacGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 84698 0.66 0.953933
Target:  5'- cGGCCGcuggagcggcagguGGAGCGCguggccgagGCGCucguGGUGCUc -3'
miRNA:   3'- -CCGGCu-------------CCUCGUGaaa------CGCG----UCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 76017 0.66 0.952314
Target:  5'- -uCCGAcacGAGCGCg--GCGCAG-GCCa -3'
miRNA:   3'- ccGGCUc--CUCGUGaaaCGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 121144 0.66 0.952314
Target:  5'- uGGCCGAcGGcgGGcCGCUg-GUGCAGacgGCCg -3'
miRNA:   3'- -CCGGCU-CC--UC-GUGAaaCGCGUCa--UGG- -5'
29590 5' -54.2 NC_006151.1 + 4162 0.66 0.952314
Target:  5'- cGUCGcGGAGCGCgagcaGCGCGGccgucACCu -3'
miRNA:   3'- cCGGCuCCUCGUGaaa--CGCGUCa----UGG- -5'
29590 5' -54.2 NC_006151.1 + 103212 0.66 0.952314
Target:  5'- cGGaCGAGGAGaCGCgcgUGCGCGcgauGgaggACCu -3'
miRNA:   3'- -CCgGCUCCUC-GUGaa-ACGCGU----Ca---UGG- -5'
29590 5' -54.2 NC_006151.1 + 104472 0.66 0.952314
Target:  5'- cGUCGGGGcGGaCAUg--GCGCAcGUGCCc -3'
miRNA:   3'- cCGGCUCC-UC-GUGaaaCGCGU-CAUGG- -5'
29590 5' -54.2 NC_006151.1 + 137600 0.66 0.952314
Target:  5'- gGGUCGggaucGGGGGCGCgg-GCGgGG-ACCc -3'
miRNA:   3'- -CCGGC-----UCCUCGUGaaaCGCgUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 102781 0.66 0.952314
Target:  5'- uGGUCGGcgacgccuccGcGAGUACUUUcugcgcggcGCGCAGUACa -3'
miRNA:   3'- -CCGGCU----------C-CUCGUGAAA---------CGCGUCAUGg -5'
29590 5' -54.2 NC_006151.1 + 17393 0.66 0.948101
Target:  5'- cGCaCGAcGGGGCGCguggcGCGCGGcagcaggGCCa -3'
miRNA:   3'- cCG-GCU-CCUCGUGaaa--CGCGUCa------UGG- -5'
29590 5' -54.2 NC_006151.1 + 11044 0.66 0.948101
Target:  5'- cGGCCGGGGgcccGGC-CUggaCGCGG-GCCa -3'
miRNA:   3'- -CCGGCUCC----UCGuGAaacGCGUCaUGG- -5'
29590 5' -54.2 NC_006151.1 + 119091 0.66 0.948101
Target:  5'- aGGCCGc--GGCGCUcgGCGC-GUACg -3'
miRNA:   3'- -CCGGCuccUCGUGAaaCGCGuCAUGg -5'
29590 5' -54.2 NC_006151.1 + 33107 0.66 0.948101
Target:  5'- gGGgaGAGGaAGguCUggGCGC-GUGCCg -3'
miRNA:   3'- -CCggCUCC-UCguGAaaCGCGuCAUGG- -5'
29590 5' -54.2 NC_006151.1 + 1804 0.66 0.948101
Target:  5'- gGGCCGGGGAgGCAg---GCGCcggggaggcaAGcGCCg -3'
miRNA:   3'- -CCGGCUCCU-CGUgaaaCGCG----------UCaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.