miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 73788 0.66 0.809727
Target:  5'- gCGGcGGCGcgCaCCUCG-GCGcccacGUCGCg -3'
miRNA:   3'- -GCC-CCGCaaGcGGAGCuCGCa----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 111412 0.66 0.801147
Target:  5'- cCGGGGCGggaGaC-CGAGCGcUGcCGCa -3'
miRNA:   3'- -GCCCCGCaagCgGaGCUCGC-ACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 93440 0.66 0.801147
Target:  5'- gGGGGCGagcgggggUCGCCgccgCGGgGCGcuacagGUCGUu -3'
miRNA:   3'- gCCCCGCa-------AGCGGa---GCU-CGCa-----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 26370 0.66 0.792423
Target:  5'- uCGGGGCGcgCGUCccccggCGGGCGg--CGUc -3'
miRNA:   3'- -GCCCCGCaaGCGGa-----GCUCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 121403 0.66 0.774577
Target:  5'- uGGGGCcugCGgCgCGGGCGgggacGUCGCg -3'
miRNA:   3'- gCCCCGcaaGCgGaGCUCGCa----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 55472 0.66 0.774577
Target:  5'- gGGGGCGcgCGCC-CG-GCGc--CGCg -3'
miRNA:   3'- gCCCCGCaaGCGGaGCuCGCacaGCG- -5'
29598 3' -59.3 NC_006151.1 + 130936 0.66 0.774577
Target:  5'- gGGGGCGgggGCggCGGGgG-GUCGCg -3'
miRNA:   3'- gCCCCGCaagCGgaGCUCgCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 133164 0.66 0.774577
Target:  5'- gCGcGGGCGUggGCCUCGGccacGCGUcccacgGcCGCg -3'
miRNA:   3'- -GC-CCCGCAagCGGAGCU----CGCA------CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 68877 0.66 0.765471
Target:  5'- cCGGGGCG--CGCCcggccacgUCGAggacggccucGCG-GUCGCg -3'
miRNA:   3'- -GCCCCGCaaGCGG--------AGCU----------CGCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 65393 0.66 0.765471
Target:  5'- -cGGGCG--CGCCgugagCGAGCGgcgGUaCGCg -3'
miRNA:   3'- gcCCCGCaaGCGGa----GCUCGCa--CA-GCG- -5'
29598 3' -59.3 NC_006151.1 + 72736 0.67 0.756254
Target:  5'- aGGGGCGUcCGCa--GcAGCGccgaGUCGCu -3'
miRNA:   3'- gCCCCGCAaGCGgagC-UCGCa---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 81169 0.67 0.756254
Target:  5'- gCGGGuugGCGauguccaCGCCgcCGAGCGUGUaCGCc -3'
miRNA:   3'- -GCCC---CGCaa-----GCGGa-GCUCGCACA-GCG- -5'
29598 3' -59.3 NC_006151.1 + 96631 0.67 0.756254
Target:  5'- aGGGcGCGcagCGCCUCGAGC---UCGg -3'
miRNA:   3'- gCCC-CGCaa-GCGGAGCUCGcacAGCg -5'
29598 3' -59.3 NC_006151.1 + 24477 0.67 0.756254
Target:  5'- gGGGGCGUUgGUCUCGA-UG-GUCccgGCg -3'
miRNA:   3'- gCCCCGCAAgCGGAGCUcGCaCAG---CG- -5'
29598 3' -59.3 NC_006151.1 + 44826 0.67 0.756254
Target:  5'- gCGaGGGCG-UCGggaCCggggCGAGCGggGUCGUg -3'
miRNA:   3'- -GC-CCCGCaAGC---GGa---GCUCGCa-CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 45630 0.67 0.756254
Target:  5'- gGGGGCGUggaCGCCcCGGGCGa----- -3'
miRNA:   3'- gCCCCGCAa--GCGGaGCUCGCacagcg -5'
29598 3' -59.3 NC_006151.1 + 48591 0.67 0.756254
Target:  5'- cCGGGGUG--CGCCUCGucguGCcUGcCGCc -3'
miRNA:   3'- -GCCCCGCaaGCGGAGCu---CGcACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 115185 0.67 0.752538
Target:  5'- gGGGGCGcuccagccagcgCGCCgCGGGCGcG-CGCg -3'
miRNA:   3'- gCCCCGCaa----------GCGGaGCUCGCaCaGCG- -5'
29598 3' -59.3 NC_006151.1 + 64212 0.67 0.746934
Target:  5'- aGGuccGGCGUgggCGCCUCG-GCGUacaggGcCGCg -3'
miRNA:   3'- gCC---CCGCAa--GCGGAGCuCGCA-----CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 85164 0.67 0.746934
Target:  5'- gGGGGCcggCGCCgCGGGCGccGcCGCc -3'
miRNA:   3'- gCCCCGcaaGCGGaGCUCGCa-CaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.