miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 5' -55.4 NC_006151.1 + 5583 0.66 0.918674
Target:  5'- gGUGCUGgugAUGGUgaCGACCgcgguccccUCCGGCg -3'
miRNA:   3'- -UACGAUa--UGCCAacGCUGGa--------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 118884 0.66 0.918674
Target:  5'- -gGCgcgGCGGcgacGCGGCCg-CCGGCg -3'
miRNA:   3'- uaCGauaUGCCaa--CGCUGGagGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 65779 0.66 0.918674
Target:  5'- -cGCcg-GCGGcgGCGauggcGCCgCCCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGC-----UGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 17131 0.66 0.918674
Target:  5'- gGUGCU--GCGGgagGCGGCCaggagcaCCUGGUc -3'
miRNA:   3'- -UACGAuaUGCCaa-CGCUGGa------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 13018 0.66 0.918674
Target:  5'- cUGUcccuCGGggcGCGGCCgaCCCGGCg -3'
miRNA:   3'- uACGauauGCCaa-CGCUGGa-GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 118728 0.66 0.918674
Target:  5'- cUGCUGcACGGcuaCGugCUgggCCCGGCg -3'
miRNA:   3'- uACGAUaUGCCaacGCugGA---GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 122437 0.66 0.912798
Target:  5'- -gGCccgggagGCGGagGCGGCgUCCaCGGCg -3'
miRNA:   3'- uaCGaua----UGCCaaCGCUGgAGG-GCCG- -5'
29598 5' -55.4 NC_006151.1 + 52849 0.66 0.912798
Target:  5'- -aGCgucagGUGCGGcUGCugcguGGCCUCgCGGUa -3'
miRNA:   3'- uaCGa----UAUGCCaACG-----CUGGAGgGCCG- -5'
29598 5' -55.4 NC_006151.1 + 40565 0.66 0.906679
Target:  5'- -aGCg--GCGGcgGCGGCCgcggcggagggCUCGGCg -3'
miRNA:   3'- uaCGauaUGCCaaCGCUGGa----------GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 105876 0.66 0.906679
Target:  5'- uGUGCUAccgcGCGGUcgGCGACaagCUGGCg -3'
miRNA:   3'- -UACGAUa---UGCCAa-CGCUGgagGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 118100 0.66 0.906679
Target:  5'- -gGCgcUGCGcc-GCGACCUgCUGGCg -3'
miRNA:   3'- uaCGauAUGCcaaCGCUGGAgGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 68014 0.66 0.902891
Target:  5'- -gGCUcgGCGGcguccagguccagGCGGCC-CgCCGGCg -3'
miRNA:   3'- uaCGAuaUGCCaa-----------CGCUGGaG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 91765 0.66 0.900318
Target:  5'- -gGCgg-GCGGUgUGCGccagaccaaucACCgCCCGGCu -3'
miRNA:   3'- uaCGauaUGCCA-ACGC-----------UGGaGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 62126 0.66 0.900318
Target:  5'- -gGCUgAUGCucg-GCGugCUCCUGGCc -3'
miRNA:   3'- uaCGA-UAUGccaaCGCugGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 119969 0.66 0.893719
Target:  5'- -cGCUGUGCccg-GCGacgaGCUUCCUGGCg -3'
miRNA:   3'- uaCGAUAUGccaaCGC----UGGAGGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 38396 0.66 0.893046
Target:  5'- -gGCg--GCGGgcGCccccuccGGCCUCcCCGGCu -3'
miRNA:   3'- uaCGauaUGCCaaCG-------CUGGAG-GGCCG- -5'
29598 5' -55.4 NC_006151.1 + 4796 0.66 0.886885
Target:  5'- -cGCggcGCGGUaGCgGGCCgcggCCUGGCg -3'
miRNA:   3'- uaCGauaUGCCAaCG-CUGGa---GGGCCG- -5'
29598 5' -55.4 NC_006151.1 + 104719 0.66 0.886885
Target:  5'- cUGCUGcGCGGcgccGUGACCUaCCUGGa -3'
miRNA:   3'- uACGAUaUGCCaa--CGCUGGA-GGGCCg -5'
29598 5' -55.4 NC_006151.1 + 131905 0.67 0.87982
Target:  5'- -gGCg--ACGGggGCGgcagcaggGCCUCCgCGGUg -3'
miRNA:   3'- uaCGauaUGCCaaCGC--------UGGAGG-GCCG- -5'
29598 5' -55.4 NC_006151.1 + 106362 0.67 0.87982
Target:  5'- -cGCUGgacGCGGgcGCGcGCCcgCCgCGGCg -3'
miRNA:   3'- uaCGAUa--UGCCaaCGC-UGGa-GG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.