miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 135763 0.66 0.991921
Target:  5'- cGCGUgGGACG-GCGCCgGGcUgGACGAg -3'
miRNA:   3'- -CGCA-CCUGCuCGUGGaCU-AgUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 122330 0.66 0.991921
Target:  5'- cGCGUGGAcccCGAGgACgUGGcCAAgAACc -3'
miRNA:   3'- -CGCACCU---GCUCgUGgACUaGUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 76068 0.66 0.991921
Target:  5'- aGCGUGaa-GGGCGCCag--CAGCGACa -3'
miRNA:   3'- -CGCACcugCUCGUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 24769 0.66 0.991921
Target:  5'- ---cGGGCGAGCAUCUGuuUCAugcGCAugACg -3'
miRNA:   3'- cgcaCCUGCUCGUGGACu-AGU---UGU--UG- -5'
29599 3' -51.2 NC_006151.1 + 136452 0.66 0.990733
Target:  5'- aCGUcGACGAGCGCgUGcgCGcCGACc -3'
miRNA:   3'- cGCAcCUGCUCGUGgACuaGUuGUUG- -5'
29599 3' -51.2 NC_006151.1 + 6150 0.66 0.990733
Target:  5'- cGCGaGGACG-GCGgCCUcGGccUCGGCGGCg -3'
miRNA:   3'- -CGCaCCUGCuCGU-GGA-CU--AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 139566 0.66 0.990733
Target:  5'- gGCGcccGGuccGCGAGCGCCUGGgcUCGcgcccccccgaGCGGCg -3'
miRNA:   3'- -CGCa--CC---UGCUCGUGGACU--AGU-----------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 61186 0.66 0.990733
Target:  5'- -aGUGGcCGccAGCGCCgcgGAgagccauuUCAGCAGCg -3'
miRNA:   3'- cgCACCuGC--UCGUGGa--CU--------AGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 49904 0.66 0.989412
Target:  5'- cCGUGGACGAGC-UCgGGcgcCGGCGGCu -3'
miRNA:   3'- cGCACCUGCUCGuGGaCUa--GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 106621 0.66 0.989412
Target:  5'- cGCGUacgacgccgcGGucacCGAGCGCCUGGaCGccGCGGCg -3'
miRNA:   3'- -CGCA----------CCu---GCUCGUGGACUaGU--UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 141538 0.66 0.989412
Target:  5'- aCGUGaGCGAGCugCUGcgCGAgAGg -3'
miRNA:   3'- cGCACcUGCUCGugGACuaGUUgUUg -5'
29599 3' -51.2 NC_006151.1 + 78677 0.66 0.988552
Target:  5'- gGUGcUGGACGGGCucuacgccggccgggGCCUcGUCGccGCGACg -3'
miRNA:   3'- -CGC-ACCUGCUCG---------------UGGAcUAGU--UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 53106 0.66 0.987949
Target:  5'- aGCG-GGAggccguacuCGAGCGCCU--UCAugAGCu -3'
miRNA:   3'- -CGCaCCU---------GCUCGUGGAcuAGUugUUG- -5'
29599 3' -51.2 NC_006151.1 + 102946 0.66 0.987949
Target:  5'- cGCGcUGGACGcGGCGCCcGccgcccaCGACGGCg -3'
miRNA:   3'- -CGC-ACCUGC-UCGUGGaCua-----GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 114320 0.66 0.987949
Target:  5'- uGCGc-GACGGGgGCCUGcgCGACGugcGCg -3'
miRNA:   3'- -CGCacCUGCUCgUGGACuaGUUGU---UG- -5'
29599 3' -51.2 NC_006151.1 + 125259 0.66 0.987949
Target:  5'- gGCGgGGAcgccCGAGcCGCCggccGUCAACGGCa -3'
miRNA:   3'- -CGCaCCU----GCUC-GUGGac--UAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 63585 0.66 0.986998
Target:  5'- gGCGUGGcgcggguucgcgaacACGGGCACCc--UCAGCGcGCg -3'
miRNA:   3'- -CGCACC---------------UGCUCGUGGacuAGUUGU-UG- -5'
29599 3' -51.2 NC_006151.1 + 20723 0.66 0.986333
Target:  5'- gGCG-GGGcCGGGCGCgaGAcgAACAGCa -3'
miRNA:   3'- -CGCaCCU-GCUCGUGgaCUagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 64218 0.66 0.986333
Target:  5'- gGCGUGGGCGccucggcguacAGgGCCg---CGACGGCg -3'
miRNA:   3'- -CGCACCUGC-----------UCgUGGacuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 51392 0.66 0.986333
Target:  5'- cGCGgcccgGGGCGAGCGC---GUC-GCAGCg -3'
miRNA:   3'- -CGCa----CCUGCUCGUGgacUAGuUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.