miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 5' -58.3 NC_006151.1 + 130607 0.66 0.852454
Target:  5'- aGCGccucccAGGCG-UCCugGUCgCGGCUCa -3'
miRNA:   3'- -CGCuc----UCCGCgAGGugCAG-GCUGAGc -5'
29604 5' -58.3 NC_006151.1 + 65406 0.66 0.852454
Target:  5'- aGCGAGcGGCgguacGCgUCCAUGUCCauCUCGu -3'
miRNA:   3'- -CGCUCuCCG-----CG-AGGUGCAGGcuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 34002 0.66 0.852454
Target:  5'- -gGAGGGGCGUcCCGgCGcgCCGGCcCGg -3'
miRNA:   3'- cgCUCUCCGCGaGGU-GCa-GGCUGaGC- -5'
29604 5' -58.3 NC_006151.1 + 47259 0.66 0.852454
Target:  5'- gGCGAGAuGGacCGCUCCggcgcgcaGCGUCCGcgGCUg- -3'
miRNA:   3'- -CGCUCU-CC--GCGAGG--------UGCAGGC--UGAgc -5'
29604 5' -58.3 NC_006151.1 + 94333 0.66 0.852454
Target:  5'- aGCG-GAGGUGgUCCAUGUCgGggcACUgGg -3'
miRNA:   3'- -CGCuCUCCGCgAGGUGCAGgC---UGAgC- -5'
29604 5' -58.3 NC_006151.1 + 97623 0.66 0.852454
Target:  5'- uGCGAGcGGCGCgcggCCAUGUcguuggugcgcgCCGcCUCc -3'
miRNA:   3'- -CGCUCuCCGCGa---GGUGCA------------GGCuGAGc -5'
29604 5' -58.3 NC_006151.1 + 69346 0.66 0.852454
Target:  5'- cGCGAGcgcGGCGUagcCCGCGUCCaGCcagUCGa -3'
miRNA:   3'- -CGCUCu--CCGCGa--GGUGCAGGcUG---AGC- -5'
29604 5' -58.3 NC_006151.1 + 130011 0.66 0.844701
Target:  5'- cCGAGAcGGCGCgcgCCACGgCCG--UCGu -3'
miRNA:   3'- cGCUCU-CCGCGa--GGUGCaGGCugAGC- -5'
29604 5' -58.3 NC_006151.1 + 128906 0.66 0.844701
Target:  5'- gGUGGGGGcgucGCGCUCguCGUCCGAg-CGc -3'
miRNA:   3'- -CGCUCUC----CGCGAGguGCAGGCUgaGC- -5'
29604 5' -58.3 NC_006151.1 + 16881 0.66 0.844701
Target:  5'- cGCGGGGcGCGCU-CGCGUCCGuuGC-CGc -3'
miRNA:   3'- -CGCUCUcCGCGAgGUGCAGGC--UGaGC- -5'
29604 5' -58.3 NC_006151.1 + 66292 0.66 0.843915
Target:  5'- uCGAGGcgcacgcGGCGCUCCcgGCGgUCCGAggCGa -3'
miRNA:   3'- cGCUCU-------CCGCGAGG--UGC-AGGCUgaGC- -5'
29604 5' -58.3 NC_006151.1 + 82511 0.66 0.836764
Target:  5'- cCGAGcAGGUGC-CCGCGgaugCgCGugUCGu -3'
miRNA:   3'- cGCUC-UCCGCGaGGUGCa---G-GCugAGC- -5'
29604 5' -58.3 NC_006151.1 + 54440 0.66 0.836764
Target:  5'- gGCGAcGAGGCGC-CCGcCGUggCCGAgcgcCUCu -3'
miRNA:   3'- -CGCU-CUCCGCGaGGU-GCA--GGCU----GAGc -5'
29604 5' -58.3 NC_006151.1 + 106605 0.66 0.836764
Target:  5'- aGCcGGAGGCGaacgCCGCGUaCGACgccgCGg -3'
miRNA:   3'- -CGcUCUCCGCga--GGUGCAgGCUGa---GC- -5'
29604 5' -58.3 NC_006151.1 + 78211 0.66 0.836764
Target:  5'- uCGGGAcGG-GCUCCACGUC--GCUCa -3'
miRNA:   3'- cGCUCU-CCgCGAGGUGCAGgcUGAGc -5'
29604 5' -58.3 NC_006151.1 + 100720 0.66 0.828651
Target:  5'- cGCGAGgagcAGGCGCcgcCCGCGcCCGcCUUc -3'
miRNA:   3'- -CGCUC----UCCGCGa--GGUGCaGGCuGAGc -5'
29604 5' -58.3 NC_006151.1 + 8008 0.66 0.820368
Target:  5'- gGCGGGAGGgGg--CGCGagaCCGGCUCGg -3'
miRNA:   3'- -CGCUCUCCgCgagGUGCa--GGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 68873 0.66 0.820368
Target:  5'- aGCGccGGGGCGCgcccggCCACGUCgaggaCGGcCUCGc -3'
miRNA:   3'- -CGCu-CUCCGCGa-----GGUGCAG-----GCU-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 117072 0.66 0.811922
Target:  5'- uCGAGcagcAGGCGCguggucgcgUCCACG-CCGGcCUCGu -3'
miRNA:   3'- cGCUC----UCCGCG---------AGGUGCaGGCU-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 39732 0.66 0.811922
Target:  5'- ------aGCGCUCCGCGcUCgGGCUCGg -3'
miRNA:   3'- cgcucucCGCGAGGUGC-AGgCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.