Results 1 - 20 of 676 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29605 | 5' | -62.7 | NC_006151.1 | + | 10506 | 0.66 | 0.65732 |
Target: 5'- cCCGCcGCCgcAGGcGCGuCCcCGGCGCggGCg -3' miRNA: 3'- -GGCGcUGG--UCC-UGC-GGcGCCGCGa-CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 63560 | 0.66 | 0.65732 |
Target: 5'- uCUGC-ACCAGGAucUGCCGaaaguuGGCGUgGCg -3' miRNA: 3'- -GGCGcUGGUCCU--GCGGCg-----CCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 69801 | 0.66 | 0.65732 |
Target: 5'- -gGCGGCaCAGG-CGCUccaGGCGCUcGCc -3' miRNA: 3'- ggCGCUG-GUCCuGCGGcg-CCGCGA-CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 39472 | 0.66 | 0.65732 |
Target: 5'- nCGCuGGCCcGGGUGCCGCGagcuccGCGCgGCc -3' miRNA: 3'- gGCG-CUGGuCCUGCGGCGC------CGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 95683 | 0.66 | 0.65732 |
Target: 5'- cUCGcCGuCCAGG-UGCCGCugguaGCGCUGg -3' miRNA: 3'- -GGC-GCuGGUCCuGCGGCGc----CGCGACg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 121079 | 0.66 | 0.65732 |
Target: 5'- cUCGCaGACgGGcGGCGgCGCcGgGCUGCa -3' miRNA: 3'- -GGCG-CUGgUC-CUGCgGCGcCgCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 131863 | 0.66 | 0.65732 |
Target: 5'- aCGCGcGCCGGcGGCGUCG-GGuCGCaggGCa -3' miRNA: 3'- gGCGC-UGGUC-CUGCGGCgCC-GCGa--CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 40244 | 0.66 | 0.65732 |
Target: 5'- uCCGCuGAgCGGGGCGCCcccuCGGCcCgGCc -3' miRNA: 3'- -GGCG-CUgGUCCUGCGGc---GCCGcGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 58374 | 0.66 | 0.65732 |
Target: 5'- gUCGUGAUCucGACGgagagCGCGGCGCaGCc -3' miRNA: 3'- -GGCGCUGGucCUGCg----GCGCCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 117021 | 0.66 | 0.65732 |
Target: 5'- cCCGCGGgcCCGGGcCGCagGCGGUaccagccgaaGCUGg -3' miRNA: 3'- -GGCGCU--GGUCCuGCGg-CGCCG----------CGACg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 117177 | 0.66 | 0.65732 |
Target: 5'- aCGCGguagaagggccGCCggGGGGCGUCGUaguaguagacgGGCGCgGCg -3' miRNA: 3'- gGCGC-----------UGG--UCCUGCGGCG-----------CCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 129559 | 0.66 | 0.65732 |
Target: 5'- aCCGCaGCUGGcgcauGACGgCGUcGCGCUGCu -3' miRNA: 3'- -GGCGcUGGUC-----CUGCgGCGcCGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 122247 | 0.66 | 0.656351 |
Target: 5'- gCGUGAcggccaaCCAGGGCGaggccaCGCacaGGCGcCUGCu -3' miRNA: 3'- gGCGCU-------GGUCCUGCg-----GCG---CCGC-GACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 39948 | 0.66 | 0.656351 |
Target: 5'- cCCGCuggugcuGACCccGGGCGCCGuCGcCGCcGCg -3' miRNA: 3'- -GGCG-------CUGGu-CCUGCGGC-GCcGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 56425 | 0.66 | 0.654414 |
Target: 5'- uUCGCGGCCcaccucagcccgcucGACGagaCGCGcGUGCUGCc -3' miRNA: 3'- -GGCGCUGGuc-------------CUGCg--GCGC-CGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 114221 | 0.66 | 0.654414 |
Target: 5'- aCCGCGuguuccugGCCucGGugGCCGCGcgggaccccucggaGCGC-GCc -3' miRNA: 3'- -GGCGC--------UGGu-CCugCGGCGC--------------CGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 70783 | 0.66 | 0.654414 |
Target: 5'- gCGCGccuccggcACCGGcGugGCCGUcgugggcagcuaccGGCGCaGCu -3' miRNA: 3'- gGCGC--------UGGUC-CugCGGCG--------------CCGCGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 138908 | 0.66 | 0.64763 |
Target: 5'- aCGCGGCgAGcGugcuCGCCGCcacGGUcaucgGCUGCa -3' miRNA: 3'- gGCGCUGgUC-Cu---GCGGCG---CCG-----CGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 121747 | 0.66 | 0.64763 |
Target: 5'- aCGUGuuucACUGGaGAUGCUGaaGCGCUGCg -3' miRNA: 3'- gGCGC----UGGUC-CUGCGGCgcCGCGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 94757 | 0.66 | 0.64763 |
Target: 5'- gCGCGGaaaCAGG-CGCCGCaGCGUc-- -3' miRNA: 3'- gGCGCUg--GUCCuGCGGCGcCGCGacg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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