miRNA display CGI


Results 1 - 20 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 129559 0.66 0.65732
Target:  5'- aCCGCaGCUGGcgcauGACGgCGUcGCGCUGCu -3'
miRNA:   3'- -GGCGcUGGUC-----CUGCgGCGcCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 63560 0.66 0.65732
Target:  5'- uCUGC-ACCAGGAucUGCCGaaaguuGGCGUgGCg -3'
miRNA:   3'- -GGCGcUGGUCCU--GCGGCg-----CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 69801 0.66 0.65732
Target:  5'- -gGCGGCaCAGG-CGCUccaGGCGCUcGCc -3'
miRNA:   3'- ggCGCUG-GUCCuGCGGcg-CCGCGA-CG- -5'
29605 5' -62.7 NC_006151.1 + 39472 0.66 0.65732
Target:  5'- nCGCuGGCCcGGGUGCCGCGagcuccGCGCgGCc -3'
miRNA:   3'- gGCG-CUGGuCCUGCGGCGC------CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 95683 0.66 0.65732
Target:  5'- cUCGcCGuCCAGG-UGCCGCugguaGCGCUGg -3'
miRNA:   3'- -GGC-GCuGGUCCuGCGGCGc----CGCGACg -5'
29605 5' -62.7 NC_006151.1 + 121079 0.66 0.65732
Target:  5'- cUCGCaGACgGGcGGCGgCGCcGgGCUGCa -3'
miRNA:   3'- -GGCG-CUGgUC-CUGCgGCGcCgCGACG- -5'
29605 5' -62.7 NC_006151.1 + 131863 0.66 0.65732
Target:  5'- aCGCGcGCCGGcGGCGUCG-GGuCGCaggGCa -3'
miRNA:   3'- gGCGC-UGGUC-CUGCGGCgCC-GCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 40244 0.66 0.65732
Target:  5'- uCCGCuGAgCGGGGCGCCcccuCGGCcCgGCc -3'
miRNA:   3'- -GGCG-CUgGUCCUGCGGc---GCCGcGaCG- -5'
29605 5' -62.7 NC_006151.1 + 58374 0.66 0.65732
Target:  5'- gUCGUGAUCucGACGgagagCGCGGCGCaGCc -3'
miRNA:   3'- -GGCGCUGGucCUGCg----GCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 117021 0.66 0.65732
Target:  5'- cCCGCGGgcCCGGGcCGCagGCGGUaccagccgaaGCUGg -3'
miRNA:   3'- -GGCGCU--GGUCCuGCGg-CGCCG----------CGACg -5'
29605 5' -62.7 NC_006151.1 + 117177 0.66 0.65732
Target:  5'- aCGCGguagaagggccGCCggGGGGCGUCGUaguaguagacgGGCGCgGCg -3'
miRNA:   3'- gGCGC-----------UGG--UCCUGCGGCG-----------CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 10506 0.66 0.65732
Target:  5'- cCCGCcGCCgcAGGcGCGuCCcCGGCGCggGCg -3'
miRNA:   3'- -GGCGcUGG--UCC-UGC-GGcGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 122247 0.66 0.656351
Target:  5'- gCGUGAcggccaaCCAGGGCGaggccaCGCacaGGCGcCUGCu -3'
miRNA:   3'- gGCGCU-------GGUCCUGCg-----GCG---CCGC-GACG- -5'
29605 5' -62.7 NC_006151.1 + 39948 0.66 0.656351
Target:  5'- cCCGCuggugcuGACCccGGGCGCCGuCGcCGCcGCg -3'
miRNA:   3'- -GGCG-------CUGGu-CCUGCGGC-GCcGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 70783 0.66 0.654414
Target:  5'- gCGCGccuccggcACCGGcGugGCCGUcgugggcagcuaccGGCGCaGCu -3'
miRNA:   3'- gGCGC--------UGGUC-CugCGGCG--------------CCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 114221 0.66 0.654414
Target:  5'- aCCGCGuguuccugGCCucGGugGCCGCGcgggaccccucggaGCGC-GCc -3'
miRNA:   3'- -GGCGC--------UGGu-CCugCGGCGC--------------CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 56425 0.66 0.654414
Target:  5'- uUCGCGGCCcaccucagcccgcucGACGagaCGCGcGUGCUGCc -3'
miRNA:   3'- -GGCGCUGGuc-------------CUGCg--GCGC-CGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 121747 0.66 0.64763
Target:  5'- aCGUGuuucACUGGaGAUGCUGaaGCGCUGCg -3'
miRNA:   3'- gGCGC----UGGUC-CUGCGGCgcCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 94757 0.66 0.64763
Target:  5'- gCGCGGaaaCAGG-CGCCGCaGCGUc-- -3'
miRNA:   3'- gGCGCUg--GUCCuGCGGCGcCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 85506 0.66 0.64763
Target:  5'- gCGCGccacggugaacACCAucacGGGCcugcugcuGCUGCGGCGcCUGCu -3'
miRNA:   3'- gGCGC-----------UGGU----CCUG--------CGGCGCCGC-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.