miRNA display CGI


Results 41 - 60 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 21264 0.66 0.637929
Target:  5'- aCGCccACCAGGagcGCGCCcaucGCGGUGCccgUGCc -3'
miRNA:   3'- gGCGc-UGGUCC---UGCGG----CGCCGCG---ACG- -5'
29605 5' -62.7 NC_006151.1 + 29588 0.66 0.637929
Target:  5'- aUCGCGGCgGcuGCgGCCGCGGCgGCggggGCu -3'
miRNA:   3'- -GGCGCUGgUccUG-CGGCGCCG-CGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 92210 0.66 0.637929
Target:  5'- gCCGCGGCCGcgcuGGAgcacgaUGCUGCacGCGCcGCg -3'
miRNA:   3'- -GGCGCUGGU----CCU------GCGGCGc-CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 114903 0.66 0.637929
Target:  5'- gCGCGagGCCcGGGCGCaCGgcccCGGCGUcGCg -3'
miRNA:   3'- gGCGC--UGGuCCUGCG-GC----GCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 129393 0.66 0.637929
Target:  5'- aCCaGCu-CUGGGugGCgCGCGGCGUauucgGCg -3'
miRNA:   3'- -GG-CGcuGGUCCugCG-GCGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 65385 0.66 0.637929
Target:  5'- aCGUGccCCGGGcGCGCCGUGaGCGagcgGCg -3'
miRNA:   3'- gGCGCu-GGUCC-UGCGGCGC-CGCga--CG- -5'
29605 5' -62.7 NC_006151.1 + 85817 0.66 0.637929
Target:  5'- aCCaGCucaACCGGuGCGCCugGUGGCGCUGg -3'
miRNA:   3'- -GG-CGc--UGGUCcUGCGG--CGCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 121303 0.66 0.637929
Target:  5'- aCCGCGAC--GGGCGCUG-GaGCGUggagGCg -3'
miRNA:   3'- -GGCGCUGguCCUGCGGCgC-CGCGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 66273 0.66 0.636959
Target:  5'- cUCGCGcugaaagGCCuccucGaGGCGCaCGCGGCGCUcccgGCg -3'
miRNA:   3'- -GGCGC-------UGGu----C-CUGCG-GCGCCGCGA----CG- -5'
29605 5' -62.7 NC_006151.1 + 119481 0.66 0.636959
Target:  5'- aCGUGGCCGGcagccucGACGCCGaGGUcccCUGCu -3'
miRNA:   3'- gGCGCUGGUC-------CUGCGGCgCCGc--GACG- -5'
29605 5' -62.7 NC_006151.1 + 64194 0.66 0.635018
Target:  5'- cCCGCGAucgccCCGGGcagguccggcguggGCGCCuCGGCGUacaggGCc -3'
miRNA:   3'- -GGCGCU-----GGUCC--------------UGCGGcGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 92528 0.66 0.628224
Target:  5'- cCUGC-ACCGGG-CGCCGgacguggacuCGGUGCaGCa -3'
miRNA:   3'- -GGCGcUGGUCCuGCGGC----------GCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 130546 0.66 0.628224
Target:  5'- cCCGCG-CgAGGGCGgCGCGcUGCcGCc -3'
miRNA:   3'- -GGCGCuGgUCCUGCgGCGCcGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 134999 0.66 0.628224
Target:  5'- gCGCGucuugGCgGGGGCGCgGgGGgGCaGCa -3'
miRNA:   3'- gGCGC-----UGgUCCUGCGgCgCCgCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 135166 0.66 0.628224
Target:  5'- gCGCGGCCcGGACgGgCGCcGGCuGCcGCc -3'
miRNA:   3'- gGCGCUGGuCCUG-CgGCG-CCG-CGaCG- -5'
29605 5' -62.7 NC_006151.1 + 100353 0.66 0.628224
Target:  5'- -gGCGGacguCguGGACGCCGUgGGCGCcuuccGCg -3'
miRNA:   3'- ggCGCU----GguCCUGCGGCG-CCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 102626 0.66 0.628224
Target:  5'- gCGCGACguGaGcGCGCUcgagGCGGCGCUcgagGCc -3'
miRNA:   3'- gGCGCUGguC-C-UGCGG----CGCCGCGA----CG- -5'
29605 5' -62.7 NC_006151.1 + 121180 0.66 0.628224
Target:  5'- aCGCGGCCGuGcugcacGCGCuCGgGGCGC-GCa -3'
miRNA:   3'- gGCGCUGGUcC------UGCG-GCgCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 128809 0.66 0.628224
Target:  5'- gCGCGGCgCGcGugGCCccguacGCGGCGCUcuggGCc -3'
miRNA:   3'- gGCGCUG-GUcCugCGG------CGCCGCGA----CG- -5'
29605 5' -62.7 NC_006151.1 + 73208 0.66 0.628224
Target:  5'- cCCGCgGGCCAGG-C-CCGCGG-GCaccugggGCa -3'
miRNA:   3'- -GGCG-CUGGUCCuGcGGCGCCgCGa------CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.