miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 85192 0.66 0.80358
Target:  5'- --cCGCUGGGCaucgcgGACCugcUGGAGCggguccccgaguaccUGGACg -3'
miRNA:   3'- ucaGCGACCUG------CUGG---ACCUCG---------------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103400 0.66 0.791081
Target:  5'- --cUGCUGGGCGACUUuGccacGCUGGGCc -3'
miRNA:   3'- ucaGCGACCUGCUGGAcCu---CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 84384 0.66 0.791081
Target:  5'- cGG-CGCgcggGGACGGgCggGGAGCgggUGGGCg -3'
miRNA:   3'- -UCaGCGa---CCUGCUgGa-CCUCG---ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 138109 0.66 0.791081
Target:  5'- cGcCGCUGGcggacaugcugcGCGGCCUGGccgUGGACg -3'
miRNA:   3'- uCaGCGACC------------UGCUGGACCucgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 49851 0.66 0.781982
Target:  5'- cGGgcccgCGCUGGGCGcagcACgUGGAGUUuGACa -3'
miRNA:   3'- -UCa----GCGACCUGC----UGgACCUCGAcCUG- -5'
29607 5' -58.5 NC_006151.1 + 61761 0.66 0.772751
Target:  5'- cGGUCGC-GGG-GGCCgUGGuGCUGcGGCg -3'
miRNA:   3'- -UCAGCGaCCUgCUGG-ACCuCGAC-CUG- -5'
29607 5' -58.5 NC_006151.1 + 30832 0.66 0.772751
Target:  5'- gAGUUGCgUGGGCGGagaGGAGCgaggaGGACu -3'
miRNA:   3'- -UCAGCG-ACCUGCUggaCCUCGa----CCUG- -5'
29607 5' -58.5 NC_006151.1 + 92450 0.66 0.772751
Target:  5'- --gCGCUGccgcGACGuccucgcgaGCCUGGGGgUGGACu -3'
miRNA:   3'- ucaGCGAC----CUGC---------UGGACCUCgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 98442 0.66 0.763397
Target:  5'- -cUCGCcgagaaccUGGcCGGCCUGGcGCUGuGGCg -3'
miRNA:   3'- ucAGCG--------ACCuGCUGGACCuCGAC-CUG- -5'
29607 5' -58.5 NC_006151.1 + 103067 0.66 0.763397
Target:  5'- cAGgCGCacGGGC-ACCUGGAGCggcgcgagcUGGACa -3'
miRNA:   3'- -UCaGCGa-CCUGcUGGACCUCG---------ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 121311 0.66 0.763397
Target:  5'- gGG-CGCUGGagcguggagGCGGCCgccGAGCUGGuGCg -3'
miRNA:   3'- -UCaGCGACC---------UGCUGGac-CUCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 99439 0.67 0.753928
Target:  5'- cGUCGC-GGAC-ACgCUGGAGCcccucuacggGGACg -3'
miRNA:   3'- uCAGCGaCCUGcUG-GACCUCGa---------CCUG- -5'
29607 5' -58.5 NC_006151.1 + 78325 0.67 0.744354
Target:  5'- ---gGCUGGACGAgcgcCCcGGGGC-GGGCg -3'
miRNA:   3'- ucagCGACCUGCU----GGaCCUCGaCCUG- -5'
29607 5' -58.5 NC_006151.1 + 113323 0.67 0.734682
Target:  5'- --aCGCUGGGgccCGugCUGGcGCUGGcGCu -3'
miRNA:   3'- ucaGCGACCU---GCugGACCuCGACC-UG- -5'
29607 5' -58.5 NC_006151.1 + 135118 0.67 0.734682
Target:  5'- uAG-CGCgcgGGGCGGgCUGG-GCggGGACg -3'
miRNA:   3'- -UCaGCGa--CCUGCUgGACCuCGa-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 5469 0.67 0.724923
Target:  5'- cGGUgG-UGGugGAgUUGGAGUUGGAg -3'
miRNA:   3'- -UCAgCgACCugCUgGACCUCGACCUg -5'
29607 5' -58.5 NC_006151.1 + 29432 0.67 0.715085
Target:  5'- uGGcCGCgggGGGCGGCggGGAGaggGGACg -3'
miRNA:   3'- -UCaGCGa--CCUGCUGgaCCUCga-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 21476 0.67 0.715085
Target:  5'- cGUCGCcGGcucgggcagGCGGCCggGGGGCgcGGGCg -3'
miRNA:   3'- uCAGCGaCC---------UGCUGGa-CCUCGa-CCUG- -5'
29607 5' -58.5 NC_006151.1 + 77572 0.67 0.715085
Target:  5'- -uUCG-UGGACGcCCUGGGGCUGcugcugccgcuGACg -3'
miRNA:   3'- ucAGCgACCUGCuGGACCUCGAC-----------CUG- -5'
29607 5' -58.5 NC_006151.1 + 3836 0.67 0.705178
Target:  5'- cGggGCUGGAgGGCCcGGAGCcGGGg -3'
miRNA:   3'- uCagCGACCUgCUGGaCCUCGaCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.