miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 3' -50.8 NC_006151.1 + 64339 0.66 0.991669
Target:  5'- aCGUCGGCGGGaagcgcg-GGCCGuCGg -3'
miRNA:   3'- cGUAGUCGCUCguauauaaCCGGC-GC- -5'
29608 3' -50.8 NC_006151.1 + 119092 0.66 0.991194
Target:  5'- gGCcgCGGCGcucGGCGcGUAcgUGaGCCGCGc -3'
miRNA:   3'- -CGuaGUCGC---UCGUaUAUa-AC-CGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 115202 0.66 0.991194
Target:  5'- cGCG-CcGCGGGCGcgcgcgcgAUcgUGGCCGCu -3'
miRNA:   3'- -CGUaGuCGCUCGUa-------UAuaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 86245 0.66 0.991194
Target:  5'- aCAUCGGCGc-CGUGc--UGGCCGUGg -3'
miRNA:   3'- cGUAGUCGCucGUAUauaACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 30690 0.66 0.991194
Target:  5'- ---cCGGCGGGCGgggggGUGUcggGGCCGgGu -3'
miRNA:   3'- cguaGUCGCUCGUa----UAUAa--CCGGCgC- -5'
29608 3' -50.8 NC_006151.1 + 122464 0.66 0.991194
Target:  5'- gGCggCGGCGGGCGccga--GGCCGgGg -3'
miRNA:   3'- -CGuaGUCGCUCGUauauaaCCGGCgC- -5'
29608 3' -50.8 NC_006151.1 + 19913 0.66 0.990698
Target:  5'- uGCG-CGGCGcGCAgcagaaagGGCCGCa -3'
miRNA:   3'- -CGUaGUCGCuCGUauauaa--CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 44831 0.66 0.989913
Target:  5'- gGCGUCgggaccggGGCGAGCGg-----GGUCGUGg -3'
miRNA:   3'- -CGUAG--------UCGCUCGUauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 130058 0.66 0.989913
Target:  5'- uGCAUC-GCGAGCAcg-GUcagcgugaacaUGGgCGCGa -3'
miRNA:   3'- -CGUAGuCGCUCGUauaUA-----------ACCgGCGC- -5'
29608 3' -50.8 NC_006151.1 + 89488 0.66 0.989913
Target:  5'- cGCggCGGCGAGCcgGUAcgcgcgggugUGGCgcaGCGg -3'
miRNA:   3'- -CGuaGUCGCUCGuaUAUa---------ACCGg--CGC- -5'
29608 3' -50.8 NC_006151.1 + 104398 0.66 0.988491
Target:  5'- cGCAUCgccGGCG-GCGUGc--UGGcCCGCGc -3'
miRNA:   3'- -CGUAG---UCGCuCGUAUauaACC-GGCGC- -5'
29608 3' -50.8 NC_006151.1 + 73310 0.66 0.988491
Target:  5'- cGCGUCcGCGuccAGCAUGggcgggGcGCCGCGc -3'
miRNA:   3'- -CGUAGuCGC---UCGUAUauaa--C-CGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 103811 0.66 0.988491
Target:  5'- cGCuGUCGGCGGcCGUGgcggcGGCCGUGg -3'
miRNA:   3'- -CG-UAGUCGCUcGUAUauaa-CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 3377 0.66 0.988035
Target:  5'- gGCAguaggCGGCGAGgGccgccucggagGGCCGCGg -3'
miRNA:   3'- -CGUa----GUCGCUCgUauauaa-----CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 35232 0.66 0.986918
Target:  5'- ----gGGCGAGCcgAga-UGGCCGCc -3'
miRNA:   3'- cguagUCGCUCGuaUauaACCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 55072 0.66 0.986918
Target:  5'- ---cCGGCGGGCuc-----GGCCGCGg -3'
miRNA:   3'- cguaGUCGCUCGuauauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 67850 0.66 0.986918
Target:  5'- aGCAgccCGGCGAGCcgGcgccgaggUGGCgCGCGc -3'
miRNA:   3'- -CGUa--GUCGCUCGuaUaua-----ACCG-GCGC- -5'
29608 3' -50.8 NC_006151.1 + 72115 0.66 0.986752
Target:  5'- aGCGUCauggggaAGCGcAGCuccagGUUGGCCGaCGu -3'
miRNA:   3'- -CGUAG-------UCGC-UCGuaua-UAACCGGC-GC- -5'
29608 3' -50.8 NC_006151.1 + 135000 0.67 0.984255
Target:  5'- cGCGUCuuggcgggggcgcgGGgGGGCAgcagcggGGCCGCGu -3'
miRNA:   3'- -CGUAG--------------UCgCUCGUauauaa-CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 64941 0.67 0.983282
Target:  5'- cGCGUCAGCGcc-------UGGCCGCGc -3'
miRNA:   3'- -CGUAGUCGCucguauauaACCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.