miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 68046 0.66 0.970186
Target:  5'- cGGCGCGGcggGCACGggcUCGgcgACgGGCa -3'
miRNA:   3'- -CCGCGCCa--CGUGU---AGCacaUGaCUGg -5'
29608 5' -53.7 NC_006151.1 + 54678 0.66 0.970186
Target:  5'- uGGC-CGGgcaccUGCGCGUCGccggcagcGUGCUGgGCCa -3'
miRNA:   3'- -CCGcGCC-----ACGUGUAGCa-------CAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 48591 0.66 0.970186
Target:  5'- -cCGgGGUGCGCcUCGUcGUGCcuGCCg -3'
miRNA:   3'- ccGCgCCACGUGuAGCA-CAUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 118162 0.66 0.970186
Target:  5'- uGGCGCcgcuGGUGCGCGgc-----CUGACCg -3'
miRNA:   3'- -CCGCG----CCACGUGUagcacauGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 75911 0.66 0.968384
Target:  5'- gGGCGCGGUGCAguUCaccagGUcCgagagccgguccagGACCg -3'
miRNA:   3'- -CCGCGCCACGUguAGca---CAuGa-------------CUGG- -5'
29608 5' -53.7 NC_006151.1 + 82065 0.66 0.967141
Target:  5'- aGGCgGCcacGUcGCGCAUCGUcugGUGCaUGGCCc -3'
miRNA:   3'- -CCG-CGc--CA-CGUGUAGCA---CAUG-ACUGG- -5'
29608 5' -53.7 NC_006151.1 + 4798 0.66 0.967141
Target:  5'- cGGCGCGGUaGCGgGcCGcGgcCUGGCg -3'
miRNA:   3'- -CCGCGCCA-CGUgUaGCaCauGACUGg -5'
29608 5' -53.7 NC_006151.1 + 18696 0.66 0.967141
Target:  5'- cGCGCGGgcgGCGCcggcGUCGUG-AC--GCCg -3'
miRNA:   3'- cCGCGCCa--CGUG----UAGCACaUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 97745 0.66 0.967141
Target:  5'- cGCGCGGUGCgggaACA-CGUGgcuCcgGAUCa -3'
miRNA:   3'- cCGCGCCACG----UGUaGCACau-Ga-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 106110 0.66 0.967141
Target:  5'- aGGCcgccGCGGagacGUACG-CGgccGUGCUGGCCa -3'
miRNA:   3'- -CCG----CGCCa---CGUGUaGCa--CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 121912 0.66 0.967141
Target:  5'- cGCGCGGgccgagggGgACcgCGUGcugggggcGCUGGCCg -3'
miRNA:   3'- cCGCGCCa-------CgUGuaGCACa-------UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 130344 0.66 0.963882
Target:  5'- cGCGCGccGCgGCGUCGUGguugAC-GGCCg -3'
miRNA:   3'- cCGCGCcaCG-UGUAGCACa---UGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 111118 0.66 0.963882
Target:  5'- cGGCGgGGagcGCGCGUC-UGUGCgcGCCc -3'
miRNA:   3'- -CCGCgCCa--CGUGUAGcACAUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 103964 0.66 0.963882
Target:  5'- cGGCGCGccaGCGCGUCGgcgaGCUGgaggcgGCCg -3'
miRNA:   3'- -CCGCGCca-CGUGUAGCaca-UGAC------UGG- -5'
29608 5' -53.7 NC_006151.1 + 5124 0.66 0.963882
Target:  5'- cGGCGCGG-GCGa---GUGggGCgccgGGCCg -3'
miRNA:   3'- -CCGCGCCaCGUguagCACa-UGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 53085 0.66 0.963882
Target:  5'- aGGCGCaGGUGCuCGUCcGUcaGCgggaGGCCg -3'
miRNA:   3'- -CCGCG-CCACGuGUAG-CAcaUGa---CUGG- -5'
29608 5' -53.7 NC_006151.1 + 44657 0.66 0.963882
Target:  5'- uGGcCGCGGcagcccgacacaUGCGCAcggCGgccgGcgGCUGACCg -3'
miRNA:   3'- -CC-GCGCC------------ACGUGUa--GCa---Ca-UGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 22288 0.66 0.960405
Target:  5'- cGGCGCGG-GCACggCGUccACgu-CCg -3'
miRNA:   3'- -CCGCGCCaCGUGuaGCAcaUGacuGG- -5'
29608 5' -53.7 NC_006151.1 + 97911 0.66 0.960405
Target:  5'- aGGCGCGGaUGC-CGUCGcc-GCcgaGGCCg -3'
miRNA:   3'- -CCGCGCC-ACGuGUAGCacaUGa--CUGG- -5'
29608 5' -53.7 NC_006151.1 + 61817 0.66 0.960405
Target:  5'- aGCGUGGUGCucuacgcgGCGUCGac-GgUGGCCg -3'
miRNA:   3'- cCGCGCCACG--------UGUAGCacaUgACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.