miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 5' -53.7 NC_006151.1 + 121412 0.66 0.956702
Target:  5'- cGGCGCGGgcggGgACGUCGcGggGCUcgcgccGGCCu -3'
miRNA:   3'- -CCGCGCCa---CgUGUAGCaCa-UGA------CUGG- -5'
29608 5' -53.7 NC_006151.1 + 121155 0.69 0.886915
Target:  5'- gGGcCGCuGGUGCAgAcggcCGUGUACgcGGCCg -3'
miRNA:   3'- -CC-GCG-CCACGUgUa---GCACAUGa-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 119993 0.71 0.789067
Target:  5'- uGGCGCGGcGCACGcugcuggCG-GUGCUgcagGACCu -3'
miRNA:   3'- -CCGCGCCaCGUGUa------GCaCAUGA----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 119139 0.68 0.900291
Target:  5'- gGGCGCuGGUGUuCAgcuccaacUCG-GUGCUGuACCu -3'
miRNA:   3'- -CCGCG-CCACGuGU--------AGCaCAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 118433 0.71 0.79821
Target:  5'- gGGCGCGGaggugUGCGCG-CGgcucGgcCUGGCCg -3'
miRNA:   3'- -CCGCGCC-----ACGUGUaGCa---CauGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 118162 0.66 0.970186
Target:  5'- uGGCGCcgcuGGUGCGCGgc-----CUGACCg -3'
miRNA:   3'- -CCGCG----CCACGUGUagcacauGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 115210 0.7 0.824684
Target:  5'- gGGCGCGc-GCGCgAUCGUGgccGCUGccGCCg -3'
miRNA:   3'- -CCGCGCcaCGUG-UAGCACa--UGAC--UGG- -5'
29608 5' -53.7 NC_006151.1 + 114416 0.67 0.939563
Target:  5'- cGGUGCacGUGCACcacCGcGUGCUGgACCg -3'
miRNA:   3'- -CCGCGc-CACGUGua-GCaCAUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 114151 0.67 0.95277
Target:  5'- cGGCuCGG-GCGCAgcgaccgcgCGgcccucGUGCUGGCCu -3'
miRNA:   3'- -CCGcGCCaCGUGUa--------GCa-----CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 111617 0.68 0.926364
Target:  5'- cGGUGCuGUGCgucgaggccaggaucACGUUGuUGUGCUcGGCCg -3'
miRNA:   3'- -CCGCGcCACG---------------UGUAGC-ACAUGA-CUGG- -5'
29608 5' -53.7 NC_006151.1 + 111118 0.66 0.963882
Target:  5'- cGGCGgGGagcGCGCGUC-UGUGCgcGCCc -3'
miRNA:   3'- -CCGCgCCa--CGUGUAGcACAUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 110887 0.67 0.939085
Target:  5'- uGGCGCuccacgaGGUGCuuGUCGUGcGCguGCCg -3'
miRNA:   3'- -CCGCG-------CCACGugUAGCACaUGacUGG- -5'
29608 5' -53.7 NC_006151.1 + 106799 0.67 0.944204
Target:  5'- cGGCgGCGGUGCuCGUCGg-----GGCCc -3'
miRNA:   3'- -CCG-CGCCACGuGUAGCacaugaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 106410 0.66 0.960044
Target:  5'- aGGCGCuGUucacgcuGCGCGUCGccgACUGgACCg -3'
miRNA:   3'- -CCGCGcCA-------CGUGUAGCacaUGAC-UGG- -5'
29608 5' -53.7 NC_006151.1 + 106110 0.66 0.967141
Target:  5'- aGGCcgccGCGGagacGUACG-CGgccGUGCUGGCCa -3'
miRNA:   3'- -CCG----CGCCa---CGUGUaGCa--CAUGACUGG- -5'
29608 5' -53.7 NC_006151.1 + 104571 0.72 0.721564
Target:  5'- cGCGCGGcGCGCGgaCGUGcUGCaGGCCg -3'
miRNA:   3'- cCGCGCCaCGUGUa-GCAC-AUGaCUGG- -5'
29608 5' -53.7 NC_006151.1 + 104475 0.68 0.906626
Target:  5'- cGGgGCGGacaugGCGCA-CGUGccccgcCUGGCCa -3'
miRNA:   3'- -CCgCGCCa----CGUGUaGCACau----GACUGG- -5'
29608 5' -53.7 NC_006151.1 + 103964 0.66 0.963882
Target:  5'- cGGCGCGccaGCGCGUCGgcgaGCUGgaggcgGCCg -3'
miRNA:   3'- -CCGCGCca-CGUGUAGCaca-UGAC------UGG- -5'
29608 5' -53.7 NC_006151.1 + 101479 0.67 0.939563
Target:  5'- cGcCGCGGcG-ACGUCGUGUACgucuucGACCc -3'
miRNA:   3'- cC-GCGCCaCgUGUAGCACAUGa-----CUGG- -5'
29608 5' -53.7 NC_006151.1 + 101289 0.67 0.934681
Target:  5'- gGGCGCGGgcgGCGCcgCGcUGcACUG-Cg -3'
miRNA:   3'- -CCGCGCCa--CGUGuaGC-ACaUGACuGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.