miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 124074 0.66 0.93334
Target:  5'- cGGC-CGUgCgCGCGGcCGCGACCGa--- -3'
miRNA:   3'- -UCGaGCA-G-GUGCCuGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 122702 0.66 0.93334
Target:  5'- gAGCUCGcgcUCUuCGGGCGgCGGCCcgAGc -3'
miRNA:   3'- -UCGAGC---AGGuGCCUGC-GCUGGuaUUu -5'
29609 3' -54.7 NC_006151.1 + 73299 0.66 0.93334
Target:  5'- aGGUagUCGUCCGCGucCGCGuCCAg--- -3'
miRNA:   3'- -UCG--AGCAGGUGCcuGCGCuGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 46529 0.66 0.93334
Target:  5'- aGGCcuccgaGUCCGCGGACGaccagaGGCCGg--- -3'
miRNA:   3'- -UCGag----CAGGUGCCUGCg-----CUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 65190 0.66 0.930224
Target:  5'- cGCggGUCCGCGaGCGCGcugcgcgaguugaggGCCAUGAGg -3'
miRNA:   3'- uCGagCAGGUGCcUGCGC---------------UGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 100205 0.66 0.928097
Target:  5'- uGGaCUCGauggCCACGGcCGCGggcGCCGUGGc -3'
miRNA:   3'- -UC-GAGCa---GGUGCCuGCGC---UGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 80831 0.66 0.928097
Target:  5'- aGGC-CGggaCACGGGCGCGAgCCGc--- -3'
miRNA:   3'- -UCGaGCag-GUGCCUGCGCU-GGUauuu -5'
29609 3' -54.7 NC_006151.1 + 113109 0.66 0.928097
Target:  5'- gGGCggggCCGCGGACGCGgacGCCGc--- -3'
miRNA:   3'- -UCGagcaGGUGCCUGCGC---UGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 122412 0.66 0.928097
Target:  5'- cGCUCGccgCCGUGGACGCcGCCGa--- -3'
miRNA:   3'- uCGAGCa--GGUGCCUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 37863 0.66 0.924831
Target:  5'- gGGCcgCG-CCGCGGACccccgcgccggggagGCGACCGUcGAg -3'
miRNA:   3'- -UCGa-GCaGGUGCCUG---------------CGCUGGUAuUU- -5'
29609 3' -54.7 NC_006151.1 + 131772 0.66 0.922605
Target:  5'- cGCgaccgCGgCCGCGGGCGCcGCCGUc-- -3'
miRNA:   3'- uCGa----GCaGGUGCCUGCGcUGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 88786 0.66 0.922605
Target:  5'- cGCUCGcCCucgacgacgACGGGCGCGAgCGc--- -3'
miRNA:   3'- uCGAGCaGG---------UGCCUGCGCUgGUauuu -5'
29609 3' -54.7 NC_006151.1 + 99255 0.66 0.922605
Target:  5'- cGCUCGUgaCCGCGGgcuucACGCGccGCCAc--- -3'
miRNA:   3'- uCGAGCA--GGUGCC-----UGCGC--UGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 137027 0.66 0.916865
Target:  5'- uGCUCGgCCugcCGGACGCGugCc---- -3'
miRNA:   3'- uCGAGCaGGu--GCCUGCGCugGuauuu -5'
29609 3' -54.7 NC_006151.1 + 39975 0.66 0.916865
Target:  5'- cGC-CG-CCGCGGGCGCcccgccGGCCGUGc- -3'
miRNA:   3'- uCGaGCaGGUGCCUGCG------CUGGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 130269 0.66 0.916865
Target:  5'- cGGCgcgCGgccccgaggCCGCGGGCGCGcGCCGg--- -3'
miRNA:   3'- -UCGa--GCa--------GGUGCCUGCGC-UGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 31017 0.66 0.910878
Target:  5'- gGGgUCGccgCCGCGGcccuCGCGGCCcgGGAg -3'
miRNA:   3'- -UCgAGCa--GGUGCCu---GCGCUGGuaUUU- -5'
29609 3' -54.7 NC_006151.1 + 117740 0.66 0.910878
Target:  5'- cGCUCGUCCcacGCGGaggugcgaaGCGCcGGCCGa--- -3'
miRNA:   3'- uCGAGCAGG---UGCC---------UGCG-CUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 85448 0.66 0.910878
Target:  5'- cGGC-CGccuUCCugGGcCGCGGCCAg--- -3'
miRNA:   3'- -UCGaGC---AGGugCCuGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 3258 0.66 0.910878
Target:  5'- gAGCggggCG-CCGCGGcGCGCGGCgAUGu- -3'
miRNA:   3'- -UCGa---GCaGGUGCC-UGCGCUGgUAUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.