miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 22300 0.66 0.652887
Target:  5'- gGCgUCCACGU-CcGCGCCgAGCGUcguccGGGc -3'
miRNA:   3'- -UG-AGGUGCAcGaCGCGGgUCGCG-----CCC- -5'
29609 5' -62.1 NC_006151.1 + 69555 0.66 0.652887
Target:  5'- cGCUcgCCACGUgGCUGCGCaCCGGgugcCGCGc- -3'
miRNA:   3'- -UGA--GGUGCA-CGACGCG-GGUC----GCGCcc -5'
29609 5' -62.1 NC_006151.1 + 82867 0.66 0.652887
Target:  5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3'
miRNA:   3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89477 0.66 0.652887
Target:  5'- cGCgUCACGUGCgcggcgGCGagCCGguacGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCACGa-----CGCg-GGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89989 0.66 0.652887
Target:  5'- -gUgCACGUGCcGCGCa-GGCuGCGGGc -3'
miRNA:   3'- ugAgGUGCACGaCGCGggUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 112378 0.66 0.652887
Target:  5'- -gUCCACGUcGaaGuCGCgCAGCGCGGc -3'
miRNA:   3'- ugAGGUGCA-CgaC-GCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 135454 0.66 0.652887
Target:  5'- gGCaggCCugGUaGgUGCGCgCCAgcguguccGCGCGGGc -3'
miRNA:   3'- -UGa--GGugCA-CgACGCG-GGU--------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 132306 0.66 0.651902
Target:  5'- -gUCCGCGUGCagGCGCCaCGagagcucGCGCGc- -3'
miRNA:   3'- ugAGGUGCACGa-CGCGG-GU-------CGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 39108 0.66 0.644018
Target:  5'- aGCUCUGCGccgagcccgccgaggGCgccccGCGCCCGGCcUGGGa -3'
miRNA:   3'- -UGAGGUGCa--------------CGa----CGCGGGUCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 84268 0.66 0.643032
Target:  5'- uGCUCgACGUGacgcgccugccCUGCaCCCAGaCGCGcGGc -3'
miRNA:   3'- -UGAGgUGCAC-----------GACGcGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 30620 0.66 0.643032
Target:  5'- -gUCgGCGUGC-GCGCUguGCGgGuGGg -3'
miRNA:   3'- ugAGgUGCACGaCGCGGguCGCgC-CC- -5'
29609 5' -62.1 NC_006151.1 + 106942 0.66 0.643032
Target:  5'- aGCUCCugGgGCgaGCGCCUgcuGGCGCu-- -3'
miRNA:   3'- -UGAGGugCaCGa-CGCGGG---UCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 136386 0.66 0.643032
Target:  5'- cGCUCuCGCGcuucUGCUgccugaGCGgCUAcGCGCGGGg -3'
miRNA:   3'- -UGAG-GUGC----ACGA------CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75400 0.66 0.642047
Target:  5'- gGCgggUGCGUGCgcggGUccgggagGCCCGGCGUGGGc -3'
miRNA:   3'- -UGag-GUGCACGa---CG-------CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78638 0.66 0.64106
Target:  5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3'
miRNA:   3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 31949 0.66 0.63317
Target:  5'- --cCCGCGUGaUGaCGCCgGGgaCGCGGGa -3'
miRNA:   3'- ugaGGUGCACgAC-GCGGgUC--GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 49193 0.66 0.63317
Target:  5'- uGCUgaaCACGacGCUGacCGUgCGGCGCGGGg -3'
miRNA:   3'- -UGAg--GUGCa-CGAC--GCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 133152 0.66 0.63317
Target:  5'- gACUCgGCG-GCgGCG-CgGGCGUGGGc -3'
miRNA:   3'- -UGAGgUGCaCGaCGCgGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 10508 0.66 0.63317
Target:  5'- cGCcgCCGCaG-GC-GCGucCCCGGCGCGGGc -3'
miRNA:   3'- -UGa-GGUG-CaCGaCGC--GGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 136961 0.66 0.632184
Target:  5'- uGCgCCGCcUGCUggagcuggccgccGCGCCgGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGcACGA-------------CGCGGgUCG-CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.