miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 124148 0.66 0.475609
Target:  5'- --cGGCUggAGCCCGagcaGGCCUGcCCCGa -3'
miRNA:   3'- cuuCCGG--UCGGGCac--CCGGACcGGGC- -5'
29610 3' -65.4 NC_006151.1 + 77532 0.66 0.466685
Target:  5'- --cGGCC-GCgCGUGGGCCgc-CCCGc -3'
miRNA:   3'- cuuCCGGuCGgGCACCCGGaccGGGC- -5'
29610 3' -65.4 NC_006151.1 + 5229 0.66 0.466685
Target:  5'- aGGAGGCCgAGCgCCGcgcgGcGGCggcgggGGCCCGg -3'
miRNA:   3'- -CUUCCGG-UCG-GGCa---C-CCGga----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 123764 0.66 0.457849
Target:  5'- -uGGcGCgGGCCCcggGGGCaucGGCCCGg -3'
miRNA:   3'- cuUC-CGgUCGGGca-CCCGga-CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 4408 0.66 0.457849
Target:  5'- --cGGCgCGGCCCGgguaGGCCaugucggcguaGGCCCGg -3'
miRNA:   3'- cuuCCG-GUCGGGCac--CCGGa----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 51353 0.66 0.457849
Target:  5'- --cGGCCAGgaCCGUGaGCaCcGGCCCGu -3'
miRNA:   3'- cuuCCGGUCg-GGCACcCG-GaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 129777 0.66 0.449103
Target:  5'- cGAGGGCgucgcucccGCCggCGUGGGCCcgcaugaGGCCCGu -3'
miRNA:   3'- -CUUCCGgu-------CGG--GCACCCGGa------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 114441 0.66 0.449103
Target:  5'- gGAccGCCuGCUCG-GGGCCUGcGCCgGc -3'
miRNA:   3'- -CUucCGGuCGGGCaCCCGGAC-CGGgC- -5'
29610 3' -65.4 NC_006151.1 + 4928 0.66 0.449103
Target:  5'- cGGGGUgagcagCGGCCCGUcGGUCggcgggGGCCCGu -3'
miRNA:   3'- cUUCCG------GUCGGGCAcCCGGa-----CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 48550 0.66 0.4439
Target:  5'- gGAGGGCCc-CCCGccgaguaagagacccUGcGGCCUGccGCCCGg -3'
miRNA:   3'- -CUUCCGGucGGGC---------------AC-CCGGAC--CGGGC- -5'
29610 3' -65.4 NC_006151.1 + 95370 0.66 0.4439
Target:  5'- --uGGCCAGguugcagacgccguuCUCGccGGGCgUGGCCCGc -3'
miRNA:   3'- cuuCCGGUC---------------GGGCa-CCCGgACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 119124 0.66 0.44045
Target:  5'- --cGGCCGGCCuCGUggGGGCgCUGGUg-- -3'
miRNA:   3'- cuuCCGGUCGG-GCA--CCCG-GACCGggc -5'
29610 3' -65.4 NC_006151.1 + 5412 0.66 0.437872
Target:  5'- cGAGGCCgAGUCCGUccucguccuucucgGGGCCgcgGGCgaCGg -3'
miRNA:   3'- cUUCCGG-UCGGGCA--------------CCCGGa--CCGg-GC- -5'
29610 3' -65.4 NC_006151.1 + 113106 0.66 0.431892
Target:  5'- cGggGGCgGGgCCGcGGacgcggacgccGCCgGGCCCGg -3'
miRNA:   3'- -CuuCCGgUCgGGCaCC-----------CGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 38569 0.66 0.431892
Target:  5'- aGAAGcGCCGcgcGCCCG-GGGCCcgccGCCCc -3'
miRNA:   3'- -CUUC-CGGU---CGGGCaCCCGGac--CGGGc -5'
29610 3' -65.4 NC_006151.1 + 100582 0.66 0.431042
Target:  5'- -cAGGCCgccaccguccugcGGCCCGUGGagcgcuuCCUGGCgCGc -3'
miRNA:   3'- cuUCCGG-------------UCGGGCACCc------GGACCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 81709 0.66 0.423433
Target:  5'- cGAGGuCCAGCCgG-GGcGCCgGGUCCu -3'
miRNA:   3'- cUUCC-GGUCGGgCaCC-CGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 2082 0.67 0.415073
Target:  5'- aGAuGGCCuccaccuugaugGGCCCGagcGGGCCgcgGGgCCGg -3'
miRNA:   3'- -CUuCCGG------------UCGGGCa--CCCGGa--CCgGGC- -5'
29610 3' -65.4 NC_006151.1 + 28262 0.67 0.415073
Target:  5'- -nGGGCCucaCaCGUGGGCCccggggacgcgGGCCCGg -3'
miRNA:   3'- cuUCCGGucgG-GCACCCGGa----------CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 8591 0.67 0.415073
Target:  5'- uGAGGGCCGGUgCGaguauggGGGCC-GGUgCGg -3'
miRNA:   3'- -CUUCCGGUCGgGCa------CCCGGaCCGgGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.