miRNA display CGI


Results 21 - 40 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29610 3' -65.4 NC_006151.1 + 114441 0.66 0.449103
Target:  5'- gGAccGCCuGCUCG-GGGCCUGcGCCgGc -3'
miRNA:   3'- -CUucCGGuCGGGCaCCCGGAC-CGGgC- -5'
29610 3' -65.4 NC_006151.1 + 113106 0.66 0.431892
Target:  5'- cGggGGCgGGgCCGcGGacgcggacgccGCCgGGCCCGg -3'
miRNA:   3'- -CuuCCGgUCgGGCaCC-----------CGGaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 111264 0.68 0.366349
Target:  5'- cGAGGCCGGgaaCCGcgcgGgcgggggguacgcGGCCUGGCCCa -3'
miRNA:   3'- cUUCCGGUCg--GGCa---C-------------CCGGACCGGGc -5'
29610 3' -65.4 NC_006151.1 + 110832 0.76 0.096137
Target:  5'- -cAGGCCga-CCGUGGGCCgGGCCCa -3'
miRNA:   3'- cuUCCGGucgGGCACCCGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 104389 0.67 0.37484
Target:  5'- --cGGCUGGCCCGcaucgccgGcGGCgugCUGGCCCGc -3'
miRNA:   3'- cuuCCGGUCGGGCa-------C-CCG---GACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 101450 0.79 0.057773
Target:  5'- --uGGUCGGCgCCGUGGGCCUGGgCCu -3'
miRNA:   3'- cuuCCGGUCG-GGCACCCGGACCgGGc -5'
29610 3' -65.4 NC_006151.1 + 101214 0.67 0.390614
Target:  5'- cGAGGGCCAGgC-GUGGaCggGGCCCGg -3'
miRNA:   3'- -CUUCCGGUCgGgCACCcGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 100582 0.66 0.431042
Target:  5'- -cAGGCCgccaccguccugcGGCCCGUGGagcgcuuCCUGGCgCGc -3'
miRNA:   3'- cuUCCGG-------------UCGGGCACCc------GGACCGgGC- -5'
29610 3' -65.4 NC_006151.1 + 98968 0.67 0.381885
Target:  5'- cGAGGCgGcgcugguGCCCGUGGGCgaGGUCa- -3'
miRNA:   3'- cUUCCGgU-------CGGGCACCCGgaCCGGgc -5'
29610 3' -65.4 NC_006151.1 + 98455 0.7 0.247222
Target:  5'- --uGGCCGGCCUggcgcuGUGGcGCCUGcGCCaCGa -3'
miRNA:   3'- cuuCCGGUCGGG------CACC-CGGAC-CGG-GC- -5'
29610 3' -65.4 NC_006151.1 + 95370 0.66 0.4439
Target:  5'- --uGGCCAGguugcagacgccguuCUCGccGGGCgUGGCCCGc -3'
miRNA:   3'- cuuCCGGUC---------------GGGCa-CCCGgACCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 87339 0.68 0.344608
Target:  5'- -cGGGCCuGCCgGgccuccaGGGCCUggcGGCCCc -3'
miRNA:   3'- cuUCCGGuCGGgCa------CCCGGA---CCGGGc -5'
29610 3' -65.4 NC_006151.1 + 86320 0.69 0.289537
Target:  5'- uGggGGCCGugcucGCCCGc--GCCgugGGCCCGg -3'
miRNA:   3'- -CuuCCGGU-----CGGGCaccCGGa--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 85163 0.7 0.276894
Target:  5'- aGggGGCCGGCgCCGcgGGcGCCgccGCCCc -3'
miRNA:   3'- -CuuCCGGUCG-GGCa-CC-CGGac-CGGGc -5'
29610 3' -65.4 NC_006151.1 + 82689 0.7 0.264697
Target:  5'- cGAGGGCggCGGCCCccgcgaGGGCCaggaGGCCCGc -3'
miRNA:   3'- -CUUCCG--GUCGGGca----CCCGGa---CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 82389 0.7 0.258763
Target:  5'- cGAAGGCCAcgagcuccgcGCCCGaGGGC--GGCCCc -3'
miRNA:   3'- -CUUCCGGU----------CGGGCaCCCGgaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 82130 0.68 0.330163
Target:  5'- --uGGaagCGGCCCGcGGGCg-GGCCCGg -3'
miRNA:   3'- cuuCCg--GUCGGGCaCCCGgaCCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 81802 0.7 0.264697
Target:  5'- cGAAGaGCCcggcgaAGCCCGcgGGGCagccGGCCCGc -3'
miRNA:   3'- -CUUC-CGG------UCGGGCa-CCCGga--CCGGGC- -5'
29610 3' -65.4 NC_006151.1 + 81709 0.66 0.423433
Target:  5'- cGAGGuCCAGCCgG-GGcGCCgGGUCCu -3'
miRNA:   3'- cUUCC-GGUCGGgCaCC-CGGaCCGGGc -5'
29610 3' -65.4 NC_006151.1 + 77532 0.66 0.466685
Target:  5'- --cGGCC-GCgCGUGGGCCgc-CCCGc -3'
miRNA:   3'- cuuCCGGuCGgGCACCCGGaccGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.