miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29613 3' -58.1 NC_006151.1 + 138696 0.66 0.853578
Target:  5'- cGGAcGCGcugagCCCGGcGcugcGCGCCGCGCg -3'
miRNA:   3'- -CCUaCGUcaa--GGGCC-C----UGCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 98937 0.66 0.853578
Target:  5'- ---aGCAGUUCgCCGaGGCGgCGCggGCCg -3'
miRNA:   3'- ccuaCGUCAAG-GGCcCUGCgGCG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 68233 0.66 0.853578
Target:  5'- ---cGCAGcgCCCGcGGGCGCgucagguagaCGCGCg -3'
miRNA:   3'- ccuaCGUCaaGGGC-CCUGCG----------GCGUGg -5'
29613 3' -58.1 NC_006151.1 + 96185 0.66 0.853578
Target:  5'- ---cGCAGagcacgagcgCCaUGGGGCGCCGCgucGCCg -3'
miRNA:   3'- ccuaCGUCaa--------GG-GCCCUGCGGCG---UGG- -5'
29613 3' -58.1 NC_006151.1 + 120491 0.66 0.853578
Target:  5'- ---cGCAGUggUUCuGGACGCUGCugCa -3'
miRNA:   3'- ccuaCGUCAa-GGGcCCUGCGGCGugG- -5'
29613 3' -58.1 NC_006151.1 + 49842 0.66 0.853578
Target:  5'- cGGcgGCGGcgggCCCGcgcuGGGCGCaGCACg -3'
miRNA:   3'- -CCuaCGUCaa--GGGC----CCUGCGgCGUGg -5'
29613 3' -58.1 NC_006151.1 + 52391 0.66 0.853578
Target:  5'- cGGggGCGG----CGGGcgcCGCCGCGCCc -3'
miRNA:   3'- -CCuaCGUCaaggGCCCu--GCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 70211 0.66 0.853578
Target:  5'- cGAUGUGGgcgUCCauCGcGGCGCCGCucACCg -3'
miRNA:   3'- cCUACGUCa--AGG--GCcCUGCGGCG--UGG- -5'
29613 3' -58.1 NC_006151.1 + 99591 0.66 0.853578
Target:  5'- uGGcgGCGG---CCGa-GCGCCGCGCCg -3'
miRNA:   3'- -CCuaCGUCaagGGCccUGCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 104582 0.66 0.853578
Target:  5'- cGGAcgugcUGCAGg--CCGGcGGCaGCCGCggcGCCg -3'
miRNA:   3'- -CCU-----ACGUCaagGGCC-CUG-CGGCG---UGG- -5'
29613 3' -58.1 NC_006151.1 + 141380 0.66 0.853578
Target:  5'- cGGggGCGGgcCCCGGGcaaacaGCGgCGUGuCCg -3'
miRNA:   3'- -CCuaCGUCaaGGGCCC------UGCgGCGU-GG- -5'
29613 3' -58.1 NC_006151.1 + 13754 0.66 0.851272
Target:  5'- ---cGCGGgccggaccgcccccUUCCCGGGACuugGCaCGCAUCc -3'
miRNA:   3'- ccuaCGUC--------------AAGGGCCCUG---CG-GCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 8300 0.66 0.851272
Target:  5'- cGGgcGCcgcgucccgccccgAGccCCCGGGGCGCgCGgGCCu -3'
miRNA:   3'- -CCuaCG--------------UCaaGGGCCCUGCG-GCgUGG- -5'
29613 3' -58.1 NC_006151.1 + 5719 0.66 0.845825
Target:  5'- uGGcuGUGCuGGUggcgCCgGGGuccgAgGCCGCGCCg -3'
miRNA:   3'- -CC--UACG-UCAa---GGgCCC----UgCGGCGUGG- -5'
29613 3' -58.1 NC_006151.1 + 75022 0.66 0.845825
Target:  5'- uGGGgcacgGCgaAGggCCCgGGGACGUC-CACCu -3'
miRNA:   3'- -CCUa----CG--UCaaGGG-CCCUGCGGcGUGG- -5'
29613 3' -58.1 NC_006151.1 + 90739 0.66 0.845825
Target:  5'- uGGcgGCGGcgCCCucgGGGGCGgCGgGCa -3'
miRNA:   3'- -CCuaCGUCaaGGG---CCCUGCgGCgUGg -5'
29613 3' -58.1 NC_006151.1 + 91304 0.66 0.845825
Target:  5'- ---aGCAGccgCgCCGGGaagGCGCCGUACa -3'
miRNA:   3'- ccuaCGUCaa-G-GGCCC---UGCGGCGUGg -5'
29613 3' -58.1 NC_006151.1 + 75402 0.66 0.845825
Target:  5'- cGGGUGCGugcgcGggUCCGGGAgGCCcggcguggGCGCg -3'
miRNA:   3'- -CCUACGU-----CaaGGGCCCUgCGG--------CGUGg -5'
29613 3' -58.1 NC_006151.1 + 114712 0.66 0.845825
Target:  5'- cGGggGCGGUUUCCGGaauaaaGCGCUugaGCaACCu -3'
miRNA:   3'- -CCuaCGUCAAGGGCCc-----UGCGG---CG-UGG- -5'
29613 3' -58.1 NC_006151.1 + 3626 0.66 0.845825
Target:  5'- ---gGCcGUcCCCGcGGAgGgCCGCGCCg -3'
miRNA:   3'- ccuaCGuCAaGGGC-CCUgC-GGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.