miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 5' -53.7 NC_006151.1 + 135668 0.66 0.962676
Target:  5'- cCGCGUcCUGUAcgccACgGaCGGCUGCg -3'
miRNA:   3'- -GCGCAuGACGUcaaaUGgC-GCCGACG- -5'
29614 5' -53.7 NC_006151.1 + 102318 0.66 0.962676
Target:  5'- aCGCacaugGUGCUGaCGGag-GCgCGCGcGCUGCu -3'
miRNA:   3'- -GCG-----CAUGAC-GUCaaaUG-GCGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 75808 0.66 0.962676
Target:  5'- -aCGUGgUGCAGga-GCCGCuGGC-GCa -3'
miRNA:   3'- gcGCAUgACGUCaaaUGGCG-CCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 54918 0.66 0.962676
Target:  5'- gCGCGUGCacggcgaggUGCuGgcgUGCCaCGcGCUGCg -3'
miRNA:   3'- -GCGCAUG---------ACGuCaa-AUGGcGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 119076 0.66 0.959079
Target:  5'- gCGCGcccguCUcGCAG---GCCGCGGCgcucgGCg -3'
miRNA:   3'- -GCGCau---GA-CGUCaaaUGGCGCCGa----CG- -5'
29614 5' -53.7 NC_006151.1 + 78734 0.66 0.959079
Target:  5'- gCGCGcGCUGCGGcccacguCCGCcGuCUGCg -3'
miRNA:   3'- -GCGCaUGACGUCaaau---GGCGcC-GACG- -5'
29614 5' -53.7 NC_006151.1 + 9469 0.66 0.959079
Target:  5'- cCGCGUccGCUuCGGccccCCGCGGCcGCg -3'
miRNA:   3'- -GCGCA--UGAcGUCaaauGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 127380 0.66 0.959079
Target:  5'- cCGCGggggugGCGGgg-GCCGCGGCc-- -3'
miRNA:   3'- -GCGCauga--CGUCaaaUGGCGCCGacg -5'
29614 5' -53.7 NC_006151.1 + 133331 0.66 0.959079
Target:  5'- gGCGcGCcggGCGGccgguuCCGCGGCgGCg -3'
miRNA:   3'- gCGCaUGa--CGUCaaau--GGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 103739 0.66 0.958332
Target:  5'- cCGCugGCgcgGCAGUgcgaggagcgcGCCGCGGCgcUGCg -3'
miRNA:   3'- -GCGcaUGa--CGUCAaa---------UGGCGCCG--ACG- -5'
29614 5' -53.7 NC_006151.1 + 95938 0.66 0.956424
Target:  5'- gGCGUGCgguugaagcucUGCAGcgagagcccgacgccGCCGCGGCgcaGCa -3'
miRNA:   3'- gCGCAUG-----------ACGUCaaa------------UGGCGCCGa--CG- -5'
29614 5' -53.7 NC_006151.1 + 49173 0.66 0.955251
Target:  5'- gGCGcGCcGCGGggUGCUGCuGCUGa -3'
miRNA:   3'- gCGCaUGaCGUCaaAUGGCGcCGACg -5'
29614 5' -53.7 NC_006151.1 + 53473 0.66 0.955251
Target:  5'- gCGCGaACgccgGCAGcgaGCCGUGGCacGCg -3'
miRNA:   3'- -GCGCaUGa---CGUCaaaUGGCGCCGa-CG- -5'
29614 5' -53.7 NC_006151.1 + 6124 0.66 0.951188
Target:  5'- gGCGgcCUcGUGGcuccgGCCGCGGCcGCg -3'
miRNA:   3'- gCGCauGA-CGUCaaa--UGGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 39901 0.66 0.951188
Target:  5'- gCGCGccuuCUGC-----GCCGCGgGCUGCu -3'
miRNA:   3'- -GCGCau--GACGucaaaUGGCGC-CGACG- -5'
29614 5' -53.7 NC_006151.1 + 103679 0.66 0.951188
Target:  5'- gCGCGcGCgGCGGgggUGCUGCGcGCcGCc -3'
miRNA:   3'- -GCGCaUGaCGUCaa-AUGGCGC-CGaCG- -5'
29614 5' -53.7 NC_006151.1 + 104842 0.66 0.951188
Target:  5'- cCGCG-GCggagGCGGaccagGCCGCGGCgacggaGCg -3'
miRNA:   3'- -GCGCaUGa---CGUCaaa--UGGCGCCGa-----CG- -5'
29614 5' -53.7 NC_006151.1 + 72227 0.66 0.949922
Target:  5'- cCGUGUuCUGCAGcaccagcgacugcCCGCGGCcGCc -3'
miRNA:   3'- -GCGCAuGACGUCaaau---------GGCGCCGaCG- -5'
29614 5' -53.7 NC_006151.1 + 139310 0.66 0.946885
Target:  5'- gCGCGUGCUGCucg--ACCGU-GCUcGCc -3'
miRNA:   3'- -GCGCAUGACGucaaaUGGCGcCGA-CG- -5'
29614 5' -53.7 NC_006151.1 + 136409 0.66 0.946885
Target:  5'- aGCGgcUACgcGCGGggccCCGCGGCgGCg -3'
miRNA:   3'- gCGC--AUGa-CGUCaaauGGCGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.