miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 3' -62.5 NC_006151.1 + 44379 0.66 0.621455
Target:  5'- -uUGCGacggUCCCGCcGCg-GGGGCGCCg -3'
miRNA:   3'- acACGU----GGGGCGaCGagCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 24344 0.66 0.621455
Target:  5'- gGUGCAucuCCCCGUUGaUCGcGGGCucGUCCc -3'
miRNA:   3'- aCACGU---GGGGCGACgAGC-UCCG--CGGG- -5'
29616 3' -62.5 NC_006151.1 + 69997 0.66 0.621455
Target:  5'- --aGCGUCagcaCGCU-CUCGAcGGCGCCCg -3'
miRNA:   3'- acaCGUGGg---GCGAcGAGCU-CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 20913 0.66 0.621455
Target:  5'- --cGCGCCCgcuguaGUUGCUCGgcgaGGGC-CCCu -3'
miRNA:   3'- acaCGUGGGg-----CGACGAGC----UCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 132463 0.66 0.621455
Target:  5'- --aGCACCgCGCgGCa-GuAGGCGUCCa -3'
miRNA:   3'- acaCGUGGgGCGaCGagC-UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 8347 0.66 0.621455
Target:  5'- --cGCGCCCgccggaCGCggagGCgCGAGGCcCCCg -3'
miRNA:   3'- acaCGUGGG------GCGa---CGaGCUCCGcGGG- -5'
29616 3' -62.5 NC_006151.1 + 81698 0.66 0.621455
Target:  5'- gGU-CGCCCgCGCgagguccaGC-CGGGGCGCCg -3'
miRNA:   3'- aCAcGUGGG-GCGa-------CGaGCUCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 122542 0.66 0.621455
Target:  5'- cGUGUuccGgCCCGC--CUCGcGGCGCCUg -3'
miRNA:   3'- aCACG---UgGGGCGacGAGCuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 123895 0.66 0.621455
Target:  5'- --cGCgGCCCCGCcgUGCggCGcGGCGgCCg -3'
miRNA:   3'- acaCG-UGGGGCG--ACGa-GCuCCGCgGG- -5'
29616 3' -62.5 NC_006151.1 + 80563 0.66 0.620468
Target:  5'- aUGU-CAUCCCGCcGuCUCcccgacgGAcGGCGCCCg -3'
miRNA:   3'- -ACAcGUGGGGCGaC-GAG-------CU-CCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 86303 0.66 0.620468
Target:  5'- cGUcaaCugCCCGCaGCUgGGGGCcgugcucGCCCg -3'
miRNA:   3'- aCAc--GugGGGCGaCGAgCUCCG-------CGGG- -5'
29616 3' -62.5 NC_006151.1 + 59872 0.66 0.611593
Target:  5'- --cGCAgCaCCGCUgGCUggCGaAGGCGUCCa -3'
miRNA:   3'- acaCGUgG-GGCGA-CGA--GC-UCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 3124 0.66 0.611593
Target:  5'- --gGguCCCagGCcggGCgCGGGGCGCCCu -3'
miRNA:   3'- acaCguGGGg-CGa--CGaGCUCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 84227 0.66 0.611593
Target:  5'- cGUGC-CCCUGCuggUGUUCGuGGC-CCa -3'
miRNA:   3'- aCACGuGGGGCG---ACGAGCuCCGcGGg -5'
29616 3' -62.5 NC_006151.1 + 134312 0.66 0.608637
Target:  5'- -uUGCACgCCGCUGCgccucgCGccGGGCaucgccacggacguGCCCu -3'
miRNA:   3'- acACGUGgGGCGACGa-----GC--UCCG--------------CGGG- -5'
29616 3' -62.5 NC_006151.1 + 11016 0.66 0.605683
Target:  5'- --cGCcCgCCCGCUcGCUCGccgggccggccggccGGGgGCCCg -3'
miRNA:   3'- acaCGuG-GGGCGA-CGAGC---------------UCCgCGGG- -5'
29616 3' -62.5 NC_006151.1 + 106375 0.66 0.601746
Target:  5'- --cGCGCgCCCGCcGC----GGCGCCCg -3'
miRNA:   3'- acaCGUG-GGGCGaCGagcuCCGCGGG- -5'
29616 3' -62.5 NC_006151.1 + 113795 0.66 0.601746
Target:  5'- --cGCACaCgCGCUGCU-GcGGCGCCa -3'
miRNA:   3'- acaCGUG-GgGCGACGAgCuCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 20114 0.66 0.601746
Target:  5'- --gGCGCCCCgGCgacgggGCUgGggggcGGGCGCCg -3'
miRNA:   3'- acaCGUGGGG-CGa-----CGAgC-----UCCGCGGg -5'
29616 3' -62.5 NC_006151.1 + 78823 0.66 0.601746
Target:  5'- --aGUACCUguuucaGCUGUUUGGGcGCGCCUg -3'
miRNA:   3'- acaCGUGGGg-----CGACGAGCUC-CGCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.