miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 3' -57 NC_006151.1 + 105179 0.66 0.866673
Target:  5'- cGCCgagcGCAUCgaggCGCUGCAgaCGCUGCg -3'
miRNA:   3'- -CGGaga-CGUAG----GCGGCGUagGUGACG- -5'
29617 3' -57 NC_006151.1 + 58439 0.66 0.866673
Target:  5'- cGCCUCggugGCGUgCGCgCGCgcggcgucgcgGUCCACgacgacgucgGCg -3'
miRNA:   3'- -CGGAGa---CGUAgGCG-GCG-----------UAGGUGa---------CG- -5'
29617 3' -57 NC_006151.1 + 17953 0.66 0.866673
Target:  5'- cGUCUCcgGCGcCCGCCugccgGCGUcCCACgcgGCg -3'
miRNA:   3'- -CGGAGa-CGUaGGCGG-----CGUA-GGUGa--CG- -5'
29617 3' -57 NC_006151.1 + 136966 0.66 0.866673
Target:  5'- cGCCUgCUGgAgcuggCCGCCGCG-CCggGCgGCg -3'
miRNA:   3'- -CGGA-GACgUa----GGCGGCGUaGG--UGaCG- -5'
29617 3' -57 NC_006151.1 + 72988 0.66 0.865925
Target:  5'- gGCCgUUGUAgagCCGguCCGCGUacgagugCCGCUGCg -3'
miRNA:   3'- -CGGaGACGUa--GGC--GGCGUA-------GGUGACG- -5'
29617 3' -57 NC_006151.1 + 118718 0.66 0.859096
Target:  5'- -gCUCUGCcgCCuGCUGCAcggCUACgUGCu -3'
miRNA:   3'- cgGAGACGuaGG-CGGCGUa--GGUG-ACG- -5'
29617 3' -57 NC_006151.1 + 5695 0.66 0.859096
Target:  5'- uGCCggcgCUGCGgccaCCGCUGCuggCugUGCu -3'
miRNA:   3'- -CGGa---GACGUa---GGCGGCGuagGugACG- -5'
29617 3' -57 NC_006151.1 + 39838 0.66 0.859096
Target:  5'- cGUCUcCUGCggCCGCCGgGgccucgccgagcUCCGCgGCc -3'
miRNA:   3'- -CGGA-GACGuaGGCGGCgU------------AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 49167 0.66 0.859096
Target:  5'- gGCCUggGCG--CGCCGCGgggugCUGCUGCu -3'
miRNA:   3'- -CGGAgaCGUagGCGGCGUa----GGUGACG- -5'
29617 3' -57 NC_006151.1 + 58004 0.66 0.859096
Target:  5'- cGCCUCcgGCG-CgGCCGCggCCACc-- -3'
miRNA:   3'- -CGGAGa-CGUaGgCGGCGuaGGUGacg -5'
29617 3' -57 NC_006151.1 + 60605 0.66 0.859096
Target:  5'- cGCCUCcaccGCcgUCGUCGCcgCCGCcGUc -3'
miRNA:   3'- -CGGAGa---CGuaGGCGGCGuaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 94708 0.66 0.859096
Target:  5'- aCCaCUGCGcgcgcUCCaGCCGCG-CCACgGCg -3'
miRNA:   3'- cGGaGACGU-----AGG-CGGCGUaGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 95952 0.66 0.854451
Target:  5'- -gCUCUGCAgcgagagcccgacgCCGCCGCGg-CGCaGCa -3'
miRNA:   3'- cgGAGACGUa-------------GGCGGCGUagGUGaCG- -5'
29617 3' -57 NC_006151.1 + 42837 0.66 0.851314
Target:  5'- -aCgggGUGggagCCGCCGUcgCCGCUGCa -3'
miRNA:   3'- cgGagaCGUa---GGCGGCGuaGGUGACG- -5'
29617 3' -57 NC_006151.1 + 120101 0.66 0.851314
Target:  5'- aGCCggugCUGCG-CCGCCGCGUggUgGacaUGCu -3'
miRNA:   3'- -CGGa---GACGUaGGCGGCGUA--GgUg--ACG- -5'
29617 3' -57 NC_006151.1 + 97658 0.66 0.851314
Target:  5'- cGCCUcCUGg--UCGCCGCGggCCAC-GCa -3'
miRNA:   3'- -CGGA-GACguaGGCGGCGUa-GGUGaCG- -5'
29617 3' -57 NC_006151.1 + 59371 0.66 0.851314
Target:  5'- cGCCgcgCgGCcgUCGUCGCGUCCA--GCa -3'
miRNA:   3'- -CGGa--GaCGuaGGCGGCGUAGGUgaCG- -5'
29617 3' -57 NC_006151.1 + 79622 0.66 0.851314
Target:  5'- cCCggaGCG-CCGCCGUcgCCGCUGg -3'
miRNA:   3'- cGGagaCGUaGGCGGCGuaGGUGACg -5'
29617 3' -57 NC_006151.1 + 136080 0.66 0.843333
Target:  5'- cGCCggaGCGcCCGCUGCGcUCCAUcGCg -3'
miRNA:   3'- -CGGagaCGUaGGCGGCGU-AGGUGaCG- -5'
29617 3' -57 NC_006151.1 + 127311 0.66 0.83516
Target:  5'- gGCCgu--CGUCCGCgCGgGUCCGCggGCg -3'
miRNA:   3'- -CGGagacGUAGGCG-GCgUAGGUGa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.