miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29617 5' -54.6 NC_006151.1 + 25109 0.66 0.947225
Target:  5'- -uGCuGCGUG-CGAgCGcuGGGCGUGGa -3'
miRNA:   3'- uuUGuCGCAUaGCU-GCu-CCCGCACCc -5'
29617 5' -54.6 NC_006151.1 + 63747 0.66 0.94274
Target:  5'- --cCGGCGcGUCGGCG-GGGCGUc-- -3'
miRNA:   3'- uuuGUCGCaUAGCUGCuCCCGCAccc -5'
29617 5' -54.6 NC_006151.1 + 34396 0.66 0.94274
Target:  5'- aGAGgGGUGggggaGAgGAGGGgGUGGGu -3'
miRNA:   3'- -UUUgUCGCauag-CUgCUCCCgCACCC- -5'
29617 5' -54.6 NC_006151.1 + 4025 0.66 0.94274
Target:  5'- -cGCGGCGUAgguccaGGCGGccucgcGGGCGcGGGc -3'
miRNA:   3'- uuUGUCGCAUag----CUGCU------CCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 17364 0.66 0.939934
Target:  5'- aGAACGGCGccgugggGUcggaccguguccgcaCGACGGGGcGCGUGGc -3'
miRNA:   3'- -UUUGUCGCa------UA---------------GCUGCUCC-CGCACCc -5'
29617 5' -54.6 NC_006151.1 + 63879 0.66 0.938015
Target:  5'- -cGCAGCGUGUCcGCGucGGGGCGc--- -3'
miRNA:   3'- uuUGUCGCAUAGcUGC--UCCCGCaccc -5'
29617 5' -54.6 NC_006151.1 + 27288 0.66 0.938015
Target:  5'- --gUAGCGcccgCGcuugGGGGGCGUGGGg -3'
miRNA:   3'- uuuGUCGCaua-GCug--CUCCCGCACCC- -5'
29617 5' -54.6 NC_006151.1 + 84382 0.66 0.933048
Target:  5'- -cGCGGCGcg-CGGgGAcGGGCG-GGGa -3'
miRNA:   3'- uuUGUCGCauaGCUgCU-CCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 83007 0.66 0.933048
Target:  5'- -cGCGGCGcagacgcgCGGCGAGGGCcccaggucgacgGUGGa -3'
miRNA:   3'- uuUGUCGCaua-----GCUGCUCCCG------------CACCc -5'
29617 5' -54.6 NC_006151.1 + 27372 0.66 0.932537
Target:  5'- ---gGGCGgGUCGACGGGcgagaacGGCG-GGGa -3'
miRNA:   3'- uuugUCGCaUAGCUGCUC-------CCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 72173 0.66 0.927836
Target:  5'- cGAGCAGCGgcggGACGAGGcacaCGUGGu -3'
miRNA:   3'- -UUUGUCGCauagCUGCUCCc---GCACCc -5'
29617 5' -54.6 NC_006151.1 + 22196 0.66 0.927836
Target:  5'- uAGACGuccGCGgggcCGACGaAGGGCGaGGGg -3'
miRNA:   3'- -UUUGU---CGCaua-GCUGC-UCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 49839 0.66 0.927836
Target:  5'- cGACGGCGg--CGGCGGGcccGCGcUGGGc -3'
miRNA:   3'- uUUGUCGCauaGCUGCUCc--CGC-ACCC- -5'
29617 5' -54.6 NC_006151.1 + 4091 0.66 0.927836
Target:  5'- -cACGGUGcgggCGACGAGGGCGa--- -3'
miRNA:   3'- uuUGUCGCaua-GCUGCUCCCGCaccc -5'
29617 5' -54.6 NC_006151.1 + 90371 0.67 0.922381
Target:  5'- cGAGCAGCaucGUCGACGccgcGGGCG-GGa -3'
miRNA:   3'- -UUUGUCGca-UAGCUGCu---CCCGCaCCc -5'
29617 5' -54.6 NC_006151.1 + 4174 0.67 0.922381
Target:  5'- cGAGCAGCGcGgccgucaccuccUCGAggcaggcgggccCGAGGGCGgccGGGg -3'
miRNA:   3'- -UUUGUCGCaU------------AGCU------------GCUCCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 91731 0.67 0.922381
Target:  5'- cGAACAGCGacAUCG-CGGcGGGCGagcGGGc -3'
miRNA:   3'- -UUUGUCGCa-UAGCuGCU-CCCGCa--CCC- -5'
29617 5' -54.6 NC_006151.1 + 50624 0.67 0.922381
Target:  5'- cGGCAGCGUGcacgccUCGGCGAcGGcCGcGGGc -3'
miRNA:   3'- uUUGUCGCAU------AGCUGCUcCC-GCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 57144 0.67 0.922381
Target:  5'- ----uGCGcacgCGGCGGGGGCGaGGGc -3'
miRNA:   3'- uuuguCGCaua-GCUGCUCCCGCaCCC- -5'
29617 5' -54.6 NC_006151.1 + 90739 0.67 0.916681
Target:  5'- uGGCGGCGg--CGcccuCGGGGGCGgcGGGc -3'
miRNA:   3'- uUUGUCGCauaGCu---GCUCCCGCa-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.